Jatropha Genome Database

JcCA0224551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0224551.10 + phase: 0 
         (106 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g40910.1                                                       169   9e-43
Glyma03g38310.1                                                       164   1e-41

>Glyma19g40910.1 
          Length = 211

 Score =  169 bits (427), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 81/104 (77%), Positives = 95/104 (91%)

Query: 1   MAEESPRAMRLMNFISEEQLDEAKKTRGERVDDGTAQRDRPLYEILKENKDKRDAEFNER 60
           M E+S R +R+MNF+SE+QL EAKKTRGERV+DGTAQRDRPLYEILKENKDK+DAEFNER
Sbjct: 1   MDEDSDRPIRIMNFVSEDQLVEAKKTRGERVEDGTAQRDRPLYEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLEKLEMSRREYEQQMAVDEAEQLRSFQV 104
           FKHRPPKALDEDETEFL+  E +RREYE+Q+A +EA+Q+RSFQ 
Sbjct: 61  FKHRPPKALDEDETEFLDTYETTRREYERQVADEEAQQIRSFQA 104


>Glyma03g38310.1 
          Length = 210

 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/104 (76%), Positives = 94/104 (90%)

Query: 1   MAEESPRAMRLMNFISEEQLDEAKKTRGERVDDGTAQRDRPLYEILKENKDKRDAEFNER 60
           M E+S R +R+MNF+SE+QL EAKKTRGERV+DGTAQRDRPLYEILKENKDK+DAEFNER
Sbjct: 1   MDEDSDRPIRIMNFVSEDQLVEAKKTRGERVEDGTAQRDRPLYEILKENKDKKDAEFNER 60

Query: 61  FKHRPPKALDEDETEFLEKLEMSRREYEQQMAVDEAEQLRSFQV 104
           FKHRPPKALDEDETEFL+  E +RREYE+Q+A +EA Q++SFQ 
Sbjct: 61  FKHRPPKALDEDETEFLDNYETTRREYERQVADEEALQIQSFQA 104