Jatropha Genome Database

JcCA0221281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0221281.10 + phase: 0 
         (100 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g34390.1                                                        50   7e-07

>Glyma20g34390.1 
          Length = 98

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 6  ILVVFLILAFC-FEPMLAVRSLDGDEWLQIQSLARGKVPSSSHSGCTYGLNGKGG--CPN 62
          IL + L+LA    +P LAVR L+  E L + SL +G V  S  S CTY + G GG  CP 
Sbjct: 7  ILALILVLAVVHVQPNLAVRVLNMKEQLNLMSLDKGPVTPSGPSTCTY-IPGTGGKNCPP 65

Query: 63 LKLKNFAGQLAHH 75
          L+  N AG    H
Sbjct: 66 LEEMNVAGNYVQH 78