Jatropha Genome Database

JcCA0219971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0219971.10 - phase: 0 
         (70 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g27210.1                                                       109   6e-25
Glyma02g08180.1                                                       109   8e-25
Glyma02g16010.2                                                        82   2e-16
Glyma02g16010.1                                                        82   2e-16
Glyma10g03740.2                                                        81   3e-16
Glyma10g03740.3                                                        81   3e-16
Glyma10g03740.1                                                        81   3e-16
Glyma19g10260.1                                                        62   2e-10
Glyma18g41990.1                                                        58   2e-09
Glyma07g12040.1                                                        55   2e-08

>Glyma16g27210.1 
          Length = 501

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 63/73 (86%), Gaps = 4/73 (5%)

Query: 1  MARKMLIDGELNHSN---EEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYH 57
          MARKMLIDGE   +    EE +N+DFDLF+IGAGSGGVRA+RFS+N+GA KVGICELP+H
Sbjct: 1  MARKMLIDGEAELAQGGGEEVSNFDFDLFIIGAGSGGVRAARFSSNFGA-KVGICELPFH 59

Query: 58 PISSDTAGGVGGT 70
          PISS+T GGVGGT
Sbjct: 60 PISSETIGGVGGT 72


>Glyma02g08180.1 
          Length = 501

 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 63/73 (86%), Gaps = 4/73 (5%)

Query: 1  MARKMLIDGELNHSN---EEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYH 57
          MARKMLIDGE   +    EE +N+DFDLF+IGAGSGGVRA+RFS+N+GA KVGICELP+H
Sbjct: 1  MARKMLIDGEAEIAQGGGEEVSNFDFDLFIIGAGSGGVRAARFSSNFGA-KVGICELPFH 59

Query: 58 PISSDTAGGVGGT 70
          PISS+T GGVGGT
Sbjct: 60 PISSETIGGVGGT 72


>Glyma02g16010.2 
          Length = 545

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 3   RKMLIDGE-LNHSNEEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYHPISS 61
           R  ++  E  N ++    +YDFDLF IGAGSGGVRA+RF+ANYGA  V ICELP+  ISS
Sbjct: 46  RTFIVRAESQNGADPVPAHYDFDLFTIGAGSGGVRAARFAANYGA-SVAICELPFSTISS 104

Query: 62  DTAGGVGGT 70
           +T GGVGGT
Sbjct: 105 ETTGGVGGT 113


>Glyma02g16010.1 
          Length = 545

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 3   RKMLIDGE-LNHSNEEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYHPISS 61
           R  ++  E  N ++    +YDFDLF IGAGSGGVRA+RF+ANYGA  V ICELP+  ISS
Sbjct: 46  RTFIVRAESQNGADPVPAHYDFDLFTIGAGSGGVRAARFAANYGA-SVAICELPFSTISS 104

Query: 62  DTAGGVGGT 70
           +T GGVGGT
Sbjct: 105 ETTGGVGGT 113


>Glyma10g03740.2 
          Length = 543

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 12  NHSNEEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYHPISSDTAGGVGGT 70
           N ++    +YDFDLF IGAGSGGVRA+RF+ANYGA  V ICELP+  ISS+T GGVGGT
Sbjct: 56  NGADAVPAHYDFDLFTIGAGSGGVRAARFAANYGA-SVAICELPFSTISSETTGGVGGT 113


>Glyma10g03740.3 
          Length = 545

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 12  NHSNEEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYHPISSDTAGGVGGT 70
           N ++    +YDFDLF IGAGSGGVRA+RF+ANYGA  V ICELP+  ISS+T GGVGGT
Sbjct: 56  NGADAVPAHYDFDLFTIGAGSGGVRAARFAANYGA-SVAICELPFSTISSETTGGVGGT 113


>Glyma10g03740.1 
          Length = 545

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 12  NHSNEEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYHPISSDTAGGVGGT 70
           N ++    +YDFDLF IGAGSGGVRA+RF+ANYGA  V ICELP+  ISS+T GGVGGT
Sbjct: 56  NGADAVPAHYDFDLFTIGAGSGGVRAARFAANYGA-SVAICELPFSTISSETTGGVGGT 113


>Glyma19g10260.1 
          Length = 81

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)

Query: 15 NEEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYHPISSDTAG 65
          N   T+YDF+LF IGA S GVRA+R + NYGA  V ICE P+  ISS+T G
Sbjct: 31 NLVSTHYDFNLFTIGADSDGVRAARLATNYGA-SVAICEFPFSTISSETTG 80


>Glyma18g41990.1 
          Length = 95

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 15 NEEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYHPISSDTA 64
          N   T+YDF+LF I  GS GVRA+R + NYGA  + ICE P+  ISS+T 
Sbjct: 45 NPVPTHYDFNLFTIDVGSDGVRAARLATNYGA-SIAICEFPFSTISSETT 93


>Glyma07g12040.1 
          Length = 95

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 3  RKMLIDGE-LNHSNEEETNYDFDLFVIGAGSGGVRASRFSANYGAKKVGICELPYHPISS 61
          R   +  E  N  N   T+YDF+LF IG GS  V+  R + NYG   V ICE P+  ISS
Sbjct: 32 RTFTVRAESQNGVNPVPTHYDFNLFTIGVGSDEVQVVRLATNYGT-SVAICEFPFSTISS 90

Query: 62 DTAG 65
          +T G
Sbjct: 91 ETTG 94