Jatropha Genome Database

JcCA0217021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0217021.10 - phase: 2 /partial
         (227 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g43240.1                                                       306   2e-83
Glyma20g23600.1                                                       155   3e-38

>Glyma10g43240.1 
          Length = 372

 Score =  306 bits (783), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/228 (65%), Positives = 181/228 (79%), Gaps = 3/228 (1%)

Query: 1   APIVAKCDRSRVLATWAPYCGNIAPTEFQIEFSSVRHLNPRQFVEKLSNELKVCGVVAGE 60
           APIVAKCDR R+L++W PYC N+ P EF++EFSSVRHLNPRQFVEKLS EL+V GVVAGE
Sbjct: 144 APIVAKCDRKRILSSWVPYCCNMVPEEFEVEFSSVRHLNPRQFVEKLSKELRVRGVVAGE 203

Query: 61  NYRFGYKAAGDASELVRLCEEYGMEAYIIKSVMDKNKDLRNMN-LSDLKDRGQVSSTRVR 119
           NYRFGYKAAGDA ELV+LCEEYGMEAYIIKSVMDKN+   +MN +++ K+RGQVSSTRVR
Sbjct: 204 NYRFGYKAAGDALELVKLCEEYGMEAYIIKSVMDKNRFSADMNSVTNSKERGQVSSTRVR 263

Query: 120 HALAVGDMKYVSELLGRRHRLVMMLKDQKGLTSTSSKWKFSITRSCLLNLPPKDGFYENC 179
            ALAVGD+KYVSELLGR HRL++M  DQ+    ++ ++K S  RSCLLNL PK+G YE C
Sbjct: 264 EALAVGDLKYVSELLGRPHRLILMATDQERF--STGQYKVSAPRSCLLNLAPKEGLYEKC 321

Query: 180 FLIFGNAEPVKCSVFIDSTYIHLEIDEIGLSNYNSSQAFQLMGVEFGD 227
            L+      V+CSV IDS ++H+E D  GLS+   SQ  + + +EFGD
Sbjct: 322 SLLLDQENVVQCSVVIDSKFVHIETDYGGLSDIFCSQNLKFLFIEFGD 369


>Glyma20g23600.1 
          Length = 299

 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/218 (40%), Positives = 119/218 (54%), Gaps = 52/218 (23%)

Query: 11  RVLATWAPYCGNIAPTEFQIEFSSVRHLNPRQFVEKLSNELKVCGVVAGENYRFGYKAAG 70
           RVL++W  YC N+ P EFQ+EFSSVRHLNP++ V                       +AG
Sbjct: 130 RVLSSWVSYCCNMVPEEFQVEFSSVRHLNPQKSVLDSGT------------------SAG 171

Query: 71  DASELVRLCEEYGMEAYIIKSVMDKNKDLRNMN-LSDLKDRGQVSSTRVRHALAVGDMKY 129
           DA ELV+LCEEYGMEAYIIKSVMDKN+   +MN +++  +RGQVSST+            
Sbjct: 172 DALELVKLCEEYGMEAYIIKSVMDKNRFSADMNSVTNSIERGQVSSTQ------------ 219

Query: 130 VSELLGRRHRLVMMLKDQKGLTSTSSKWKFSITRSCLLNLPPKDGFYENCFLIFGNAEPV 189
                                  +++++K S   SCLLNL PK+G YE C L       +
Sbjct: 220 ---------------------RFSTAQYKVSAPWSCLLNLAPKEGLYEKCSLFLDQKNVL 258

Query: 190 KCSVFIDSTYIHLEIDEIGLSNYNSSQAFQLMGVEFGD 227
           +C + IDS ++H+E D  GLS+   SQ  Q + +EFGD
Sbjct: 259 QCRIVIDSKFVHIETDYGGLSDIFGSQNLQFLHIEFGD 296