Jatropha Genome Database

JcCA0215901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0215901.10 - phase: 1 /partial
         (105 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g09130.1                                                       182   7e-47

>Glyma05g09130.1 
          Length = 357

 Score =  182 bits (462), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 85/105 (80%), Positives = 94/105 (89%)

Query: 1   EGYYGGVRLLMAICRVFYKHCKENGIDLHSRNFTLSYDTNIPRQTGLSGSSAIVTAALSC 60
           +GYYGGVRLLMAIC VFY +C+EN IDL   NFTLSYDTNIPRQ GLSGSS IV AAL+C
Sbjct: 77  QGYYGGVRLLMAICNVFYAYCRENAIDLGDDNFTLSYDTNIPRQAGLSGSSGIVCAALNC 136

Query: 61  LLDFYKVRHLIKVEIRPKLVLSAEQELGIVAGLQDRVAQVYGGLV 105
           LLDFY VRHL+KVE+RP L+L+AE+ELGIVAGLQDRVAQVYGGLV
Sbjct: 137 LLDFYNVRHLVKVEVRPNLILAAEKELGIVAGLQDRVAQVYGGLV 181