Jatropha Genome Database

JcCA0205491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0205491.10 + phase: 2 /pseudo/partial
         (93 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g32360.1                                                        99   9e-22

>Glyma19g32360.1 
          Length = 1076

 Score = 99.0 bits (245), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 59/79 (74%)

Query: 15  CRQDIANNLIERLSDEEIAIRHQASKLISMIDPSLVMPALVHLLYSSDEGLSYASTAFTA 74
           C QD+AN L+ERL DEE  IR QASKL+ MIDP L +PALV L+YS DE  S AS A   
Sbjct: 512 CLQDMANKLLERLGDEETKIREQASKLLPMIDPPLYLPALVGLVYSPDESQSSASDAIIG 571

Query: 75  MLQYHNQKPEVICMLLDCL 93
           +L++HNQ+ E+I +LLDCL
Sbjct: 572 VLKHHNQRIEIIFLLLDCL 590