Jatropha Genome Database

JcCA0192731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0192731.10 + phase: 0 /pseudo/partial
         (89 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g31720.1                                                        96   9e-21
Glyma08g14970.1                                                        79   8e-16

>Glyma05g31720.1 
          Length = 303

 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 51/59 (86%)

Query: 31  VSRSKPQLSKDQQQNLTRWAVLFAGSLVKNNKLLHEALMKAMLSKANVLECIEAIEKAA 89
           ++R+KP LSKDQQQNLTRWAVLFA SL+KNNK+ HEALM AM  KA+VLECI AIE AA
Sbjct: 245 INRTKPPLSKDQQQNLTRWAVLFAASLLKNNKVTHEALMAAMTKKASVLECIRAIENAA 303


>Glyma08g14970.1 
          Length = 328

 Score = 79.3 bits (194), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 50/59 (84%)

Query: 31  VSRSKPQLSKDQQQNLTRWAVLFAGSLVKNNKLLHEALMKAMLSKANVLECIEAIEKAA 89
           ++R+KP LSKDQQQNLTRWAVLFA S++KNNK+ HEALM AM  KA+VLECI  IE AA
Sbjct: 270 INRTKPPLSKDQQQNLTRWAVLFAASILKNNKVTHEALMAAMAKKASVLECIRVIENAA 328