Jatropha Genome Database

JcCA0192231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0192231.10 + phase: 0 /partial/short
         (45 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g24410.1                                                        51   3e-07
Glyma08g19090.1                                                        50   5e-07
Glyma08g07660.1                                                        50   5e-07
Glyma15g05910.1                                                        48   3e-06

>Glyma05g24410.1 
          Length = 282

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+ + IKDPQ              SKDDISCIV+RF
Sbjct: 237 VMANQEAVDIARKIKDPQKAAKQLATEALNRDSKDDISCIVVRF 280


>Glyma08g19090.1 
          Length = 280

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 28/44 (63%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+ + IKDPQ             +SKDDISCIV+RF
Sbjct: 235 VMANQEAVDIARRIKDPQKAAKQLVAESLNRESKDDISCIVVRF 278


>Glyma08g07660.1 
          Length = 236

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+ + IKDPQ              SKDDISCIV+RF
Sbjct: 191 VMANQEAVDVARRIKDPQKAAKQLATEALNRDSKDDISCIVVRF 234


>Glyma15g05910.1 
          Length = 278

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 27/44 (61%)

Query: 1   VMQNQEAVDLVKPIKDPQXXXXXXXXXXXXXKSKDDISCIVIRF 44
           VM NQEAVD+ + IKDPQ             +SKDDISCIV+ F
Sbjct: 233 VMANQEAVDIARRIKDPQKAAKQLVVESLNRESKDDISCIVVHF 276