Jatropha Genome Database

JcCA0155101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155101.10 + phase: 0 
         (113 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g24970.1                                                        67   4e-12
Glyma10g42060.1                                                        63   5e-11

>Glyma20g24970.1 
          Length = 148

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 3/62 (4%)

Query: 53  NWEELAWLRRGVVDEQMSWGSIWLPFWDVEYM-GEACSEMFSDVVWDYDIWNLKSIQQVP 111
           NWEE   L  GVVDEQMSWGS W P WD++ + G+A + +++DV+WD DIWNL +  Q+P
Sbjct: 80  NWEENMPLVGGVVDEQMSWGSTWFPGWDMDLLGGDAFTALYNDVLWDDDIWNLNN--QIP 137

Query: 112 NP 113
            P
Sbjct: 138 IP 139


>Glyma10g42060.1 
          Length = 153

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 5/64 (7%)

Query: 53  NWEELAW--LRRGVVDEQMSWGSIWLPFWDVEYM-GEACSEMFSDVVWDYDIWNLKSIQQ 109
           NWEE     L  GVVDEQMSWGS W P WD++ + G+A + +++DV+WD DIWNL +  Q
Sbjct: 82  NWEENMNMPLVGGVVDEQMSWGSTWFPGWDMDLLGGDAFTALYNDVLWDDDIWNLNN--Q 139

Query: 110 VPNP 113
           +P P
Sbjct: 140 IPIP 143