Jatropha Genome Database

JcCA0155011.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155011.20 + phase: 0 
         (334 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g06130.1                                                       514   e-146
Glyma19g25820.1                                                        52   1e-06

>Glyma16g06130.1 
          Length = 329

 Score =  514 bits (1325), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/330 (76%), Positives = 288/330 (87%), Gaps = 7/330 (2%)

Query: 1   MASVPLSSLCLPQRKLSSLSFSFGISDNLRSGLA-SVGFNSGKKNSGVR-FSICRA-AAV 57
           MAS P S+ C         +  F  SD  R G A ++ F   +KN  +  F +CRA +AV
Sbjct: 1   MASTPFSTFC----HFHKPTLLFLASDGFRLGGAPAIAFGKVRKNRKMGIFPVCRAGSAV 56

Query: 58  VFRDLDADDFRHPLDKQNTLLLRAIPGLNELGKALLGSMTEQIMLLENIGTSVLVSKNQL 117
           VFRDLDADDFRHPLD+QNTLLLRAIPGLNELGKALLG+++EQ+MLLENIGTSVLVSKNQL
Sbjct: 57  VFRDLDADDFRHPLDQQNTLLLRAIPGLNELGKALLGTVSEQVMLLENIGTSVLVSKNQL 116

Query: 118 YELHQLMTEAAEILNLEPPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQA 177
            +L+ LM EAAEILN++ PDLYVRQSPVPNAYTLAISGK+PFVV+HTSLVELLT+ ELQA
Sbjct: 117 PDLYHLMVEAAEILNVDAPDLYVRQSPVPNAYTLAISGKRPFVVIHTSLVELLTKAELQA 176

Query: 178 VLAHELGHLKCDHGVWLTFANILTLGAYTLPGLGQLIAQSLEEQLFRWLRAAELTCDRAA 237
           VLAHELGHLKCDHGVWLT+ANILTLGAY++PG+G +IAQ+LEEQLFRWLRAAELTCDRAA
Sbjct: 177 VLAHELGHLKCDHGVWLTYANILTLGAYSVPGIGGMIAQTLEEQLFRWLRAAELTCDRAA 236

Query: 238 LLVAQDPKVVISVLMKLAGGSPSVADQLNVDAFLEQARSYDKASSSPMGWYIRNAQTRQL 297
           LLVAQDPKVVISVLMKLAGG PS+ADQLNVDAFLEQARSY+KA+SSP+GWYIRNAQTRQL
Sbjct: 237 LLVAQDPKVVISVLMKLAGGCPSMADQLNVDAFLEQARSYEKAASSPIGWYIRNAQTRQL 296

Query: 298 SHPLPVLRAREIDEWSRSREYRTLLKRALE 327
           SHPLPVLRA EIDEWSR+  Y++LLKR ++
Sbjct: 297 SHPLPVLRASEIDEWSRTPAYKSLLKRGIQ 326


>Glyma19g25820.1 
          Length = 88

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/33 (78%), Positives = 27/33 (81%)

Query: 230 ELTCDRAALLVAQDPKVVISVLMKLAGGSPSVA 262
           ELT DRA LLVAQ PKV I VLMKLAGG PS+A
Sbjct: 1   ELTSDRATLLVAQGPKVGIFVLMKLAGGCPSMA 33