Jatropha Genome Database

JcCA0155011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0155011.10 - phase: 2 /partial
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g06110.1                                                       159   6e-40
Glyma19g25840.2                                                       157   3e-39
Glyma19g25840.1                                                       152   8e-38
Glyma16g06110.2                                                       115   1e-26

>Glyma16g06110.1 
          Length = 114

 Score =  159 bits (402), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 89/109 (81%), Gaps = 1/109 (0%)

Query: 3   SVNRPPTPDAAED-PGKEPSLQEIINIKLIESGXXXXXXXXXXXXXIECGWKDEMKALCR 61
           SVNRPPTPD AE+ P +EP+LQE+INIKLIE+G             ++CGWKDEMK LCR
Sbjct: 6   SVNRPPTPDVAENAPEREPTLQELINIKLIETGEKERLMELLRERLVDCGWKDEMKTLCR 65

Query: 62  AFIKKKGRNNVTVDDLVHVITPKGRASIPDSIKAELLQRIRAFLVQAAV 110
           A +KKKGRNNVTVD+L+HVITPKGRASIPDS+KAELLQRI+ FLV AA+
Sbjct: 66  AVVKKKGRNNVTVDELIHVITPKGRASIPDSVKAELLQRIQTFLVSAAL 114


>Glyma19g25840.2 
          Length = 114

 Score =  157 bits (396), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 87/109 (79%), Gaps = 1/109 (0%)

Query: 3   SVNRPPTPDAAED-PGKEPSLQEIINIKLIESGXXXXXXXXXXXXXIECGWKDEMKALCR 61
           SVNRPPTPD  E+ P +EP+LQE+INIKLIE+G             ++CGWKDEM+ LCR
Sbjct: 6   SVNRPPTPDVVENVPEREPTLQELINIKLIETGEKERLMELLRERLVDCGWKDEMETLCR 65

Query: 62  AFIKKKGRNNVTVDDLVHVITPKGRASIPDSIKAELLQRIRAFLVQAAV 110
           A +KKKGRNNVTVD+LVHVITPKGR SIPDS+KAELLQRIR FLV AA+
Sbjct: 66  AVVKKKGRNNVTVDELVHVITPKGRVSIPDSVKAELLQRIRTFLVSAAL 114


>Glyma19g25840.1 
          Length = 115

 Score =  152 bits (384), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 87/110 (79%), Gaps = 2/110 (1%)

Query: 3   SVNRPPTPDAAED-PGKEPSLQEIINIKLIESGXXXXXXXXXXXXXIECGWKDEMKALCR 61
           SVNRPPTPD  E+ P +EP+LQE+INIKLIE+G             ++CGWKDEM+ LCR
Sbjct: 6   SVNRPPTPDVVENVPEREPTLQELINIKLIETGEKERLMELLRERLVDCGWKDEMETLCR 65

Query: 62  AFIKKKGRNNVTVDDLVHVITPKGRA-SIPDSIKAELLQRIRAFLVQAAV 110
           A +KKKGRNNVTVD+LVHVITPKGR  SIPDS+KAELLQRIR FLV AA+
Sbjct: 66  AVVKKKGRNNVTVDELVHVITPKGRGISIPDSVKAELLQRIRTFLVSAAL 115


>Glyma16g06110.2 
          Length = 71

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 51/63 (80%), Positives = 59/63 (93%)

Query: 48  IECGWKDEMKALCRAFIKKKGRNNVTVDDLVHVITPKGRASIPDSIKAELLQRIRAFLVQ 107
           ++CGWKDEMK LCRA +KKKGRNNVTVD+L+HVITPKGRASIPDS+KAELLQRI+ FLV 
Sbjct: 9   VDCGWKDEMKTLCRAVVKKKGRNNVTVDELIHVITPKGRASIPDSVKAELLQRIQTFLVS 68

Query: 108 AAV 110
           AA+
Sbjct: 69  AAL 71