Jatropha Genome Database

JcCA0154851.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154851.30 + phase: 0 /partial
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g40180.1                                                       143   4e-35
Glyma13g04490.1                                                       130   4e-31
Glyma13g04490.4                                                       130   4e-31
Glyma13g04490.2                                                       130   4e-31
Glyma19g01570.1                                                        71   2e-13

>Glyma08g40180.1 
          Length = 373

 Score =  143 bits (361), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 80/95 (84%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           ME EKDAFYVVRKGD+VGIY SL+D QAQ GSSVC+P V+V+KGY L K+ EE+L+SHGL
Sbjct: 77  MEQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVSVYKGYSLSKDTEEYLVSHGL 136

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKA 95
           KNA Y+I A D+++DLFG +VPCPFQ+P++  G +
Sbjct: 137 KNALYTIRATDLKEDLFGMLVPCPFQEPSTKEGTS 171


>Glyma13g04490.1 
          Length = 283

 Score =  130 bits (326), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 79/109 (72%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           M +EKDAFYVVRKGD+VGIYKS SD Q    SSV    V+++KGY LP++ EE+L+SHGL
Sbjct: 1   MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGL 60

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALDYYSPPQRLQDVL 109
           K A YSI A DV + LFG++V CP+Q P SSGG+A +  S  + LQ  +
Sbjct: 61  KGAPYSISAADVNEGLFGRLVACPYQDPYSSGGRAFNVSSSSRNLQGAI 109


>Glyma13g04490.4 
          Length = 282

 Score =  130 bits (326), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 79/109 (72%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           M +EKDAFYVVRKGD+VGIYKS SD Q    SSV    V+++KGY LP++ EE+L+SHGL
Sbjct: 1   MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGL 60

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALDYYSPPQRLQDVL 109
           K A YSI A DV + LFG++V CP+Q P SSGG+A +  S  + LQ  +
Sbjct: 61  KGAPYSISAADVNEGLFGRLVACPYQDPYSSGGRAFNVSSSSRNLQGAI 109


>Glyma13g04490.2 
          Length = 282

 Score =  130 bits (326), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 79/109 (72%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           M +EKDAFYVVRKGD+VGIYKS SD Q    SSV    V+++KGY LP++ EE+L+SHGL
Sbjct: 1   MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGL 60

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALDYYSPPQRLQDVL 109
           K A YSI A DV + LFG++V CP+Q P SSGG+A +  S  + LQ  +
Sbjct: 61  KGAPYSISAADVNEGLFGRLVACPYQDPYSSGGRAFNVSSSSRNLQGAI 109


>Glyma19g01570.1 
          Length = 184

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 23/109 (21%)

Query: 1   MEDEKDAFYVVRKGDIVGIYKSLSDCQAQAGSSVCDPSVTVFKGYGLPKEAEEHLLSHGL 60
           M +EKDAFYVVRKGD+VGIYKS SD +    S V    V+++KGY LP + EE+L+S   
Sbjct: 1   MAEEKDAFYVVRKGDVVGIYKSFSDIRPSLASFVSSDPVSIYKGYSLPPKTEEYLVSP-- 58

Query: 61  KNATYSIHAVDVQKDLFGKIVPCPFQQPNSSGGKALDYYSPPQRLQDVL 109
                                 C F  P SSGG+A +  S  + L   +
Sbjct: 59  --------------------ADCKF-DPYSSGGRAFNVSSSSRNLHGAI 86