Jatropha Genome Database

JcCA0154801.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154801.50 - phase: 2 /partial
         (90 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g23570.1                                                       133   3e-32
Glyma10g43260.1                                                       123   4e-29
Glyma14g17830.1                                                        57   6e-09

>Glyma20g23570.1 
          Length = 418

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 75/90 (83%)

Query: 1   CCEEITDAAFQGLATIKTELGLKILKVSNCPKITVTGIGMLLEKCNGLEYLDVRSCPHVT 60
           CCEE+TDAAFQ L+  +  L LKILK+SNCPKITV GIG+++ KC  L+YLDVRSCPH+T
Sbjct: 329 CCEELTDAAFQLLSNEEPGLSLKILKISNCPKITVAGIGIIVGKCTSLQYLDVRSCPHIT 388

Query: 61  KSGCDEAGLQFPKCCKVNYTGSLNEPDVLV 90
           K+G DEAG  FP+CCK+N+ GS+NEP VL+
Sbjct: 389 KAGLDEAGFHFPECCKINFNGSVNEPVVLL 418


>Glyma10g43260.1 
          Length = 419

 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 74/91 (81%), Gaps = 1/91 (1%)

Query: 1   CCEEITDAAFQGLATIKTELGLKILKVSNCPKITVTGIGMLLEKCNGLEYLDVRSCPHVT 60
           CCEE+TDAAFQ ++  +  L LKILKVSNCPKITV GIG+++ KC  L+YLDVRSCPH+T
Sbjct: 329 CCEELTDAAFQLMSNEEPGLSLKILKVSNCPKITVAGIGIIVGKCTSLQYLDVRSCPHIT 388

Query: 61  KSGCDEAGLQFPKCCKVNYTG-SLNEPDVLV 90
           K+G DEAG  FP+ CK+N+ G S++EP VL+
Sbjct: 389 KAGLDEAGFHFPEFCKINFNGSSISEPVVLL 419


>Glyma14g17830.1 
          Length = 282

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 35/49 (71%)

Query: 4   EITDAAFQGLATIKTELGLKILKVSNCPKITVTGIGMLLEKCNGLEYLD 52
           E+TDA FQ +   +  L LKIL VS+CP  TVT IG+L++KC+  EYLD
Sbjct: 234 ELTDATFQLIGNEEAGLSLKILDVSHCPNNTVTSIGILMDKCSSQEYLD 282