Jatropha Genome Database

JcCA0154191.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154191.30 - phase: 1 /partial
         (57 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g12780.1                                                        82   1e-16
Glyma03g24460.1                                                        79   7e-16
Glyma07g14010.1                                                        75   1e-14
Glyma03g24450.1                                                        75   2e-14
Glyma03g24320.1                                                        74   2e-14
Glyma03g26340.1                                                        67   3e-12

>Glyma07g12780.1 
          Length = 401

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 43/48 (89%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPLSI 48
           RRVMSAWRVAGI+HALE WKV+ECG  M+ ++K+WQA+L+HGF+PL I
Sbjct: 347 RRVMSAWRVAGILHALECWKVNECGNVMFSVEKIWQASLQHGFRPLKI 394


>Glyma03g24460.1 
          Length = 624

 Score = 79.3 bits (194), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 41/47 (87%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPLS 47
           RRVMSAWR+AGIVH+LE W  +EC Y M++IDKVW++ L+HGF+PL+
Sbjct: 569 RRVMSAWRIAGIVHSLERWSTNECNYKMHNIDKVWRSTLQHGFQPLT 615


>Glyma07g14010.1 
          Length = 573

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 39/46 (84%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPL 46
           R+VMSAWR+AGIVH LE W   EC Y+M++IDKVW++ L+HGF+PL
Sbjct: 527 RKVMSAWRIAGIVHCLEGWSEHECNYTMHNIDKVWRSTLQHGFQPL 572


>Glyma03g24450.1 
          Length = 560

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 46/56 (82%), Gaps = 3/56 (5%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPLSI---VSAAI 53
           RRVMSAWRVAGI+HALE W V+ECG  M+ ++K+ QA+L+HGF+PL I   +SA++
Sbjct: 503 RRVMSAWRVAGILHALEGWNVNECGNVMFSVEKIRQASLQHGFRPLKINNLISASV 558


>Glyma03g24320.1 
          Length = 672

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/46 (63%), Positives = 39/46 (84%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPL 46
           RR+MSAWR+AGIVH+LE W   ECG++M++ID VW + L+HGF+PL
Sbjct: 609 RRIMSAWRIAGIVHSLEGWTEHECGHTMHNIDNVWHSTLQHGFQPL 654


>Glyma03g26340.1 
          Length = 108

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 37/46 (80%)

Query: 1   RRVMSAWRVAGIVHALEEWKVDECGYSMYHIDKVWQAALRHGFKPL 46
           R+VMS WR+A I+H+LE W   EC Y+M+++DKVW + L+HGF+PL
Sbjct: 62  RKVMSGWRIAVILHSLEGWSEHECNYTMHNVDKVWSSTLQHGFQPL 107