Jatropha Genome Database

JcCA0154181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154181.10 - phase: 0 /partial
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g07080.1                                                        74   5e-14
Glyma14g37240.1                                                        70   8e-13
Glyma11g26960.1                                                        66   8e-12

>Glyma18g07080.1 
          Length = 1422

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 60/83 (72%), Gaps = 5/83 (6%)

Query: 19 RESFARPSNADSVREDEAELQWQAIARLPSQKRSNFSLLRRSSTDYSHGGEESR-----M 73
          RESFAR SNA+ V EDE ELQ  A+ RLP+QKR N +L+R+ S+D S+ G+  +     +
Sbjct: 5  RESFARASNAEWVEEDEEELQMAALLRLPTQKRVNTALVRKPSSDTSNRGDSGKKKAKVL 64

Query: 74 EMIDVTKLDRANRELVVRKALAT 96
          E IDV KL+R++RE +V+ ALAT
Sbjct: 65 EQIDVRKLNRSHRERLVKDALAT 87


>Glyma14g37240.1 
          Length = 993

 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 31 VREDEAELQWQAIARLPSQKRSNFSLLRRSST---DYSHGGEESRMEMIDVTKLDRANRE 87
          VREDE ELQW A++RLPSQKR N++LLR SS+     + G       ++DV KL R++RE
Sbjct: 2  VREDEEELQWVALSRLPSQKRINYALLRASSSRPQPPTQGTGTGTENLMDVRKLSRSSRE 61

Query: 88 LVVRKALAT 96
           VV+KALAT
Sbjct: 62 QVVKKALAT 70


>Glyma11g26960.1 
          Length = 133

 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 19 RESFARPSNADSVREDEAELQWQAIARLPSQKRSNFSLLRRSSTDYSHGGEES--RMEMI 76
          RE FAR SNA+ V +DE ELQ  A+ RL  QK  N +L+R+ S D S+ G  S  +   I
Sbjct: 5  RELFARASNAEWVEQDEEELQMVALLRLSMQKHVNTTLVRKLSLDMSNRGGSSPGKKNKI 64

Query: 77 DVTKLDRANRELVVRKALAT 96
          DV KL+R +RE VV+ ALAT
Sbjct: 65 DVRKLNRFHRERVVKDALAT 84