Jatropha Genome Database

JcCA0153811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0153811.10 - phase: 0 
         (120 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g07110.1                                                       127   3e-30
Glyma02g12960.4                                                       125   1e-29
Glyma02g12960.3                                                       124   2e-29
Glyma02g12960.1                                                       124   2e-29
Glyma20g03090.1                                                       124   3e-29
Glyma02g12960.2                                                       121   1e-28
Glyma07g35220.1                                                       102   7e-23

>Glyma01g07110.1 
          Length = 341

 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 68/87 (78%)

Query: 21  VGFPGKCIMSSCVKPLIKSQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVLGWG 80
           V F    IMSSCVKPL++++ +PVVLLH FDSSCLEWR   PLLE++G+E WA+D+LGWG
Sbjct: 63  VRFSENPIMSSCVKPLVQTKETPVVLLHGFDSSCLEWRYVLPLLEESGIETWAIDILGWG 122

Query: 81  FSDLEMRPPCDVASKRYHLYQVTPSYI 107
           FSDLE  PPCDV SKR H YQ   SYI
Sbjct: 123 FSDLEKLPPCDVVSKRDHFYQFWKSYI 149


>Glyma02g12960.4 
          Length = 302

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 67/87 (77%)

Query: 21  VGFPGKCIMSSCVKPLIKSQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVLGWG 80
           V F    IMSSCVKPL++++ +PVVLLH FDSSCLEWR   PLLE++G+E WA+D+LGWG
Sbjct: 66  VRFSENPIMSSCVKPLVQTKETPVVLLHGFDSSCLEWRYVLPLLEESGIETWAIDILGWG 125

Query: 81  FSDLEMRPPCDVASKRYHLYQVTPSYI 107
           FSDL   PPCDV SKR H YQ   SYI
Sbjct: 126 FSDLGKLPPCDVVSKRDHFYQFWKSYI 152


>Glyma02g12960.3 
          Length = 342

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 67/87 (77%)

Query: 21  VGFPGKCIMSSCVKPLIKSQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVLGWG 80
           V F    IMSSCVKPL++++ +PVVLLH FDSSCLEWR   PLLE++G+E WA+D+LGWG
Sbjct: 66  VRFSENPIMSSCVKPLVQTKETPVVLLHGFDSSCLEWRYVLPLLEESGIETWAIDILGWG 125

Query: 81  FSDLEMRPPCDVASKRYHLYQVTPSYI 107
           FSDL   PPCDV SKR H YQ   SYI
Sbjct: 126 FSDLGKLPPCDVVSKRDHFYQFWKSYI 152


>Glyma02g12960.1 
          Length = 344

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 67/87 (77%)

Query: 21  VGFPGKCIMSSCVKPLIKSQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVLGWG 80
           V F    IMSSCVKPL++++ +PVVLLH FDSSCLEWR   PLLE++G+E WA+D+LGWG
Sbjct: 66  VRFSENPIMSSCVKPLVQTKETPVVLLHGFDSSCLEWRYVLPLLEESGIETWAIDILGWG 125

Query: 81  FSDLEMRPPCDVASKRYHLYQVTPSYI 107
           FSDL   PPCDV SKR H YQ   SYI
Sbjct: 126 FSDLGKLPPCDVVSKRDHFYQFWKSYI 152


>Glyma20g03090.1 
          Length = 258

 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 65/85 (76%)

Query: 23  FPGKCIMSSCVKPLIKSQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVLGWGFS 82
           F    IMSSCVKP +++  +PVVLLH FDSSCLEWR TYPLLE+AG E WAVD+LGWGFS
Sbjct: 23  FSENPIMSSCVKPSMQNTANPVVLLHGFDSSCLEWRYTYPLLEEAGFETWAVDILGWGFS 82

Query: 83  DLEMRPPCDVASKRYHLYQVTPSYI 107
           DLE  P CDV SKR H YQ   S+I
Sbjct: 83  DLEKLPSCDVVSKRDHFYQFWKSHI 107


>Glyma02g12960.2 
          Length = 271

 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 64/79 (81%)

Query: 29  MSSCVKPLIKSQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVLGWGFSDLEMRP 88
           MSSCVKPL++++ +PVVLLH FDSSCLEWR   PLLE++G+E WA+D+LGWGFSDL   P
Sbjct: 1   MSSCVKPLVQTKETPVVLLHGFDSSCLEWRYVLPLLEESGIETWAIDILGWGFSDLGKLP 60

Query: 89  PCDVASKRYHLYQVTPSYI 107
           PCDV SKR H YQ   SYI
Sbjct: 61  PCDVVSKRDHFYQFWKSYI 79


>Glyma07g35220.1 
          Length = 228

 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 57/76 (75%), Gaps = 1/76 (1%)

Query: 20 QVGFPGKCIMSSCVKPLIKSQNSPVVLLHCFDSSCLEWRCTYPLLEDAGLEAWAVDVLGW 79
          QV F    IMSSCVKPL+++  +PVVLLH FDSSCLEWR TY LLE+AG E WAVD+LGW
Sbjct: 3  QVRFSENPIMSSCVKPLMQNMVNPVVLLHGFDSSCLEWRYTYSLLEEAGFETWAVDILGW 62

Query: 80 GFSDLEMRP-PCDVAS 94
           FSDLE  P  CD  +
Sbjct: 63 DFSDLEKLPSSCDAVA 78