Jatropha Genome Database

JcCA0152731.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0152731.20 + phase: 0 
         (205 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g02580.1                                                       275   2e-74
Glyma16g02580.2                                                       261   3e-70

>Glyma16g02580.1 
          Length = 196

 Score =  275 bits (704), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/200 (66%), Positives = 158/200 (79%), Gaps = 4/200 (2%)

Query: 6   MGTVSATTPWKQLLIRALESNSHLKHSSFFQLATVGSDGRPSNRTVVFRGFEENSDKIQI 65
           MG+++    WKQLL+ ALESN+HLKHSSF QLAT+G++G PSNRTVVFRGF++N+D IQI
Sbjct: 1   MGSLA----WKQLLLNALESNAHLKHSSFMQLATLGTNGTPSNRTVVFRGFQDNTDNIQI 56

Query: 66  NTDTRTRKVEELKQCPFAEICWYFTDSWEQFRINGRVDVIDGSNLDSVKLQLREKSWYDS 125
           NT  RT K+EELK C  AEICWYFTDSWEQFRING VD+IDG N D +KLQ REKSW+ S
Sbjct: 57  NTHARTPKIEELKLCSSAEICWYFTDSWEQFRINGDVDIIDGLNPDPLKLQQREKSWFAS 116

Query: 126 SIKSRMQYLGPNPGLPCLNERPSNEFFLDPSSGPVAPFCLLIVDPEQVDYLNLKSNQRIM 185
           S++SR+QYL PNPGLPCLNE+   E  LDPS GPV  FCLLI++P QVDYLNLKSNQR+ 
Sbjct: 117 SLRSRLQYLLPNPGLPCLNEQALPEISLDPSIGPVDAFCLLILEPNQVDYLNLKSNQRLT 176

Query: 186 FTFTQNANGENCWNSVRINP 205
           F  + +   +  W   R+NP
Sbjct: 177 FKSSVSDAAKKSWIVERVNP 196


>Glyma16g02580.2 
          Length = 191

 Score =  261 bits (668), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/200 (64%), Positives = 154/200 (77%), Gaps = 9/200 (4%)

Query: 6   MGTVSATTPWKQLLIRALESNSHLKHSSFFQLATVGSDGRPSNRTVVFRGFEENSDKIQI 65
           MG+++    WKQLL+ ALESN+HLKHSSF QLAT+G++G PSNRTVVFRGF++N+D IQI
Sbjct: 1   MGSLA----WKQLLLNALESNAHLKHSSFMQLATLGTNGTPSNRTVVFRGFQDNTDNIQI 56

Query: 66  NTDTRTRKVEELKQCPFAEICWYFTDSWEQFRINGRVDVIDGSNLDSVKLQLREKSWYDS 125
           NT  RT K+     C  AEICWYFTDSWEQFRING VD+IDG N D +KLQ REKSW+ S
Sbjct: 57  NTHARTPKL-----CSSAEICWYFTDSWEQFRINGDVDIIDGLNPDPLKLQQREKSWFAS 111

Query: 126 SIKSRMQYLGPNPGLPCLNERPSNEFFLDPSSGPVAPFCLLIVDPEQVDYLNLKSNQRIM 185
           S++SR+QYL PNPGLPCLNE+   E  LDPS GPV  FCLLI++P QVDYLNLKSNQR+ 
Sbjct: 112 SLRSRLQYLLPNPGLPCLNEQALPEISLDPSIGPVDAFCLLILEPNQVDYLNLKSNQRLT 171

Query: 186 FTFTQNANGENCWNSVRINP 205
           F  + +   +  W   R+NP
Sbjct: 172 FKSSVSDAAKKSWIVERVNP 191