Jatropha Genome Database

JcCA0150831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150831.20 + phase: 0 /pseudo/partial/short
         (48 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g28420.2                                                        67   4e-12
Glyma11g28420.4                                                        64   3e-11
Glyma11g28420.3                                                        64   4e-11
Glyma11g28420.1                                                        64   4e-11
Glyma18g06720.1                                                        62   1e-10

>Glyma11g28420.2 
          Length = 147

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   FGLTDPPVANDIFQCMNHGRSTIAGRFAPYSEKCMGK 37
           FG T PPVAN+IF CMN GRS +AGRFAP+ EKCMGK
Sbjct: 74  FGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGK 110


>Glyma11g28420.4 
          Length = 128

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   FGLTDPPVANDIFQCMNHGRSTIAGRFAPYSEKCMGK 37
           FG T PPVAN+IF CMN GRS +AGRFAP+ EKCMGK
Sbjct: 74  FGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGK 110


>Glyma11g28420.3 
          Length = 173

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   FGLTDPPVANDIFQCMNHGRSTIAGRFAPYSEKCMGK 37
           FG T PPVAN+IF CMN GRS +AGRFAP+ EKCMGK
Sbjct: 74  FGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGK 110


>Glyma11g28420.1 
          Length = 181

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 1   FGLTDPPVANDIFQCMNHGRSTIAGRFAPYSEKCMGK 37
           FG T PPVAN+IF CMN GRS +AGRFAP+ EKCMGK
Sbjct: 82  FGQTHPPVANEIFDCMNCGRSIMAGRFAPHLEKCMGK 118


>Glyma18g06720.1 
          Length = 225

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 1   FGLTDPPVANDIFQCMNHGRSTIAGRFAPYSEKCMGK 37
           FG T PPVAN+IF C+N GRS +AGRFAP+ EKCMGK
Sbjct: 126 FGQTHPPVANEIFDCLNCGRSIMAGRFAPHLEKCMGK 162