Jatropha Genome Database

JcCA0150341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150341.10 + phase: 0 /partial
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g04810.1                                                       126   5e-30
Glyma16g22650.1                                                       122   1e-28
Glyma02g04800.1                                                       121   2e-28

>Glyma02g04810.1 
          Length = 354

 Score =  126 bits (317), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 81/108 (75%), Gaps = 3/108 (2%)

Query: 1   MPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVV 60
           MPDNIHY G G ++IA+   +T  W  + +YPF++K+A +V+K++       +NGGV VV
Sbjct: 229 MPDNIHYVGQGQYYIAMATSLTPEWDLLLRYPFIQKVAAMVTKYVLQ---PKENGGVLVV 285

Query: 61  DLEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLNLAKYPA 108
           DLEGK  +HYYD EL LISSG+KIGN++YCGS++ P+++R ++ +YPA
Sbjct: 286 DLEGKPTAHYYDSELSLISSGIKIGNYIYCGSLMYPFLVRFDMKQYPA 333


>Glyma16g22650.1 
          Length = 378

 Score =  122 bits (305), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 78/109 (71%), Gaps = 2/109 (1%)

Query: 1   MPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVV 60
           MPDNIHYDG GH+ IA+   ++   +  ++YPF+RK   + +K++ ++    KNGGV VV
Sbjct: 269 MPDNIHYDGQGHYLIAMFTALSPELELAYRYPFIRKAFAMFTKYVGSL-SISKNGGVLVV 327

Query: 61  DLEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLNLAKYPAL 109
           DLEGK  +HYYDP+L L +S +KIGNH+Y GSI  P++ R ++ KYPAL
Sbjct: 328 DLEGKPTAHYYDPKLAL-TSAIKIGNHIYAGSIFYPFVTRFDVEKYPAL 375


>Glyma02g04800.1 
          Length = 367

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 79/109 (72%), Gaps = 2/109 (1%)

Query: 1   MPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVV 60
           MPDNIHYDG GH+ IA+   +T   +  ++YPF+RK   IV+K++ ++    KNGGV VV
Sbjct: 258 MPDNIHYDGQGHYLIAMVTALTPELELAYRYPFIRKTFAIVTKYVGSL-PISKNGGVLVV 316

Query: 61  DLEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLNLAKYPAL 109
           DLEGK  +HYYDP+L L +S +KIGNH+Y GSI  P++ R ++ KYPAL
Sbjct: 317 DLEGKPTAHYYDPKLSL-TSAIKIGNHIYGGSIFYPFVTRFDIEKYPAL 364