Jatropha Genome Database

JcCA0150301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150301.10 - phase: 0 /partial
         (248 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g25580.1                                                       119   4e-27
Glyma13g11290.1                                                       110   2e-24

>Glyma13g25580.1 
          Length = 373

 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 1/165 (0%)

Query: 29  FAMEFQS-DDQAWYDVKVSRNDDILTVKYVNFSEEFNETFHVGKFKTIDKVNDFKRRFRQ 87
           + +EF++  D AWY  +VS   + L VKY NF +E++  F   +F  ++K+ +F  RFR 
Sbjct: 14  YRVEFRACKDDAWYATRVSLEGETLKVKYFNFPDEYDNAFRASEFGDLEKLQEFGERFRT 73

Query: 88  SSVQLQDQDCHKIFQGKTVCASYNFNNGEVKFFDAMVVEVLNEKHKVGXXXXXCSCTYVL 147
            S Q QD DC  + +G  VCA   F + +++++DA+V  V + KH        C CT++L
Sbjct: 74  LSKQAQDSDCRSLAEGVWVCACQCFGDDDLRYYDAVVDGVQHGKHYWKAGKETCFCTFIL 133

Query: 148 KWHDGSLEGERTFAKISDICLTPPGNRVDPSLAAFLKIAMERIDK 192
            W  G   G  T   I DIC+     ++DP +A+FL++A  +I++
Sbjct: 134 FWLQGPNAGNLTATTIQDICMVQLERQLDPVVASFLEMARRKIER 178


>Glyma13g11290.1 
          Length = 220

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 1/163 (0%)

Query: 29  FAMEFQS-DDQAWYDVKVSRNDDILTVKYVNFSEEFNETFHVGKFKTIDKVNDFKRRFRQ 87
           +  EF++ +D AWY V+V    + L VKY NFS+E +E F   +F   + + DFK RFR 
Sbjct: 20  YTTEFRAYNDDAWYTVRVLLEGERLIVKYQNFSDENDEAFEPSRFGDCEDLEDFKERFRP 79

Query: 88  SSVQLQDQDCHKIFQGKTVCASYNFNNGEVKFFDAMVVEVLNEKHKVGXXXXXCSCTYVL 147
            S QLQD +C +   G  VCA ++F   +V+F+DA++  V   +H        C CT++L
Sbjct: 80  LSRQLQDAECRRFGPGARVCACHSFAPDDVRFYDAVIDGVQENEHSWEIGEEECLCTFLL 139

Query: 148 KWHDGSLEGERTFAKISDICLTPPGNRVDPSLAAFLKIAMERI 190
            W  G      T   I +IC       +DP++ +FL +A ++I
Sbjct: 140 YWLHGPNARNLTAEPIDNICEVQSAWELDPAVTSFLDMAGKKI 182