Jatropha Genome Database

JcCA0149621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149621.20 - phase: 2 /partial
         (286 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g22240.1                                                       387   e-108
Glyma06g39770.1                                                       384   e-107

>Glyma12g22240.1 
          Length = 793

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/262 (72%), Positives = 217/262 (82%), Gaps = 3/262 (1%)

Query: 23  TFCRTAGLTSFPDYLVLHMRKFVMEEGWVPKKLXXXXXXXXXXXXSHMRSRGLQPGEQLL 82
           T  +TAGLTSFPDYLVLHMR+FVME  WVPKKL            SHMRS+G Q GE+LL
Sbjct: 535 TALKTAGLTSFPDYLVLHMRRFVMEADWVPKKLDVYIDVPDIIDISHMRSKGQQSGEELL 594

Query: 83  PEGDPSDEVESKQLVANEDIVSQLVSMGFNYLHCQKAAINTLNTGVEEAMNWLLSHMDDP 142
           P+G P +E +S ++ AN++IV+QLVSMGFN+LHCQKAAINT N GVEEAMNWLLSHMDDP
Sbjct: 595 PDGVPEEE-DSNKISANDEIVAQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMDDP 653

Query: 143 DIDVPISQGVLGTEVVDQSKVDTLISFGFQEELARKALKASGGDIEKATDWIFSNPDASV 202
           DID PIS+G  G+E VDQSKVD LISFGF+EE+ARKALKAS GDIEKATDWIF+N DASV
Sbjct: 654 DIDNPISKG-HGSETVDQSKVDILISFGFEEEIARKALKASDGDIEKATDWIFNNLDASV 712

Query: 203 SSDMDATTSSNLPNPDDAGLPDGGGRYRLFGIVSHIGTSTQCGHYVAHVFKDGRWTIFND 262
           SS M+A  S++    +D  LPDGGG+YRL GIVSH GTSTQCGHYVAH+ KDGRW IFND
Sbjct: 713 SS-MNAAPSTSASTTNDVNLPDGGGKYRLMGIVSHSGTSTQCGHYVAHILKDGRWAIFND 771

Query: 263 NKVGASVNPPKDMGYLYFFERL 284
           NKVGAS++PPK+MGYLYFFERL
Sbjct: 772 NKVGASIDPPKEMGYLYFFERL 793


>Glyma06g39770.1 
          Length = 789

 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/262 (71%), Positives = 214/262 (81%), Gaps = 2/262 (0%)

Query: 23  TFCRTAGLTSFPDYLVLHMRKFVMEEGWVPKKLXXXXXXXXXXXXSHMRSRGLQPGEQLL 82
           T  +TAGLTSFPDYLVLHMR+FVME G  PKKL            SHMRS+G Q GE+LL
Sbjct: 530 TALKTAGLTSFPDYLVLHMRRFVMEAGREPKKLDVHIDVPDIIDISHMRSKGQQSGEELL 589

Query: 83  PEGDPSDEVESKQLVANEDIVSQLVSMGFNYLHCQKAAINTLNTGVEEAMNWLLSHMDDP 142
           P+G P ++ +S ++ ANE+IV+QLVSMGFN+LHCQKAAINT N GVEEAMNWLLSHMDDP
Sbjct: 590 PDGVPGEQ-DSNKISANEEIVAQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMDDP 648

Query: 143 DIDVPISQGVLGTEVVDQSKVDTLISFGFQEELARKALKASGGDIEKATDWIFSNPDASV 202
           DID PIS+G     +VDQSKVD LISFGF+EE+AR ALKASGGDIEKATDWIF+NPDASV
Sbjct: 649 DIDNPISKGHGSETIVDQSKVDILISFGFEEEIARNALKASGGDIEKATDWIFNNPDASV 708

Query: 203 SSDMDATTSSNLPNPDDAGLPDGGGRYRLFGIVSHIGTSTQCGHYVAHVFKDGRWTIFND 262
           SS MDA+ S+     +D  LPDGGG+YRL GI+SH GTS QCGHYVAH+ KDGRW IFND
Sbjct: 709 SS-MDASPSNAESTTNDVNLPDGGGKYRLMGILSHSGTSLQCGHYVAHILKDGRWAIFND 767

Query: 263 NKVGASVNPPKDMGYLYFFERL 284
           NKVGAS++PPK+MGYLYFFERL
Sbjct: 768 NKVGASIDPPKEMGYLYFFERL 789