Jatropha Genome Database

JcCA0149441.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149441.20 - phase: 0 /partial
         (81 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g20600.1                                                       122   8e-29

>Glyma06g20600.1 
          Length = 315

 Score =  122 bits (306), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 68/82 (82%), Gaps = 4/82 (4%)

Query: 1   YDAAILHTSFARLLGHPKA----SHLEASNELQFFHELVARLNNRIKGSEAVISELWYVE 56
           YDAAILHTSFARLLG PKA      L  S+++QFFH+LV RLN++I G +AV+SELWYVE
Sbjct: 231 YDAAILHTSFARLLGPPKALSPSEQLRMSDDVQFFHDLVDRLNSQIHGFKAVVSELWYVE 290

Query: 57  EYDVLALALNGRMNIRKFQLGC 78
           EYDVLALALNGRMN RKF+L C
Sbjct: 291 EYDVLALALNGRMNTRKFRLRC 312