Jatropha Genome Database

JcCA0147051.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147051.20 + phase: 0 /pseudo
         (273 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g29630.1                                                       226   2e-59
Glyma20g01220.1                                                       224   5e-59
Glyma08g08370.1                                                       145   5e-35

>Glyma07g29630.1 
          Length = 391

 Score =  226 bits (577), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/281 (48%), Positives = 176/281 (62%), Gaps = 38/281 (13%)

Query: 1   MSTSVFNSVYLDGGCLCKGQVKFSTLRKRNEHRQCVVRSAALSTRSLQIRNSKQEKEARV 60
           MS   F+S +L      KG   F  +RK+ + +  +V+ ++ S     ++N       RV
Sbjct: 1   MSAISFSSTHLHSWKNPKG---FGKVRKQRDGK-LLVKCSSKSGNPTSLQNG-----VRV 51

Query: 61  ALLGASGYTGAEIIRLLANHPFFEISVMTADKNAGKSIESVFPHFISKKDLPVLVSTNDA 120
            +LGASGYTG+E++RLLANHP F I++MTAD+ AG+ I SVFPH +S +DLP L++  DA
Sbjct: 52  GVLGASGYTGSEVMRLLANHPQFGIALMTADRKAGQPISSVFPH-LSTRDLPDLIAIKDA 110

Query: 121 SFSDVDAVFCCLPHGTTQEIIKGLPRKLKIVDLSAVWFETTIKTDFRLRDISEYEEWYGQ 180
           +FSDVDAVFCCLPHGTTQEIIKGLP+ LKIVDLSA         DFRL+D+SEYEEWYGQ
Sbjct: 111 NFSDVDAVFCCLPHGTTQEIIKGLPKHLKIVDLSA---------DFRLKDLSEYEEWYGQ 161

Query: 181 SHRAPDLQEEAIYGLTEIFQKGNKICTASC*SWLLSNINSTPS-----------CSFTKG 229
            HRAPDLQ+EAIYGLTE+ ++  +I  A     L++N    P+            S  + 
Sbjct: 162 PHRAPDLQKEAIYGLTEVLRE--EIKNAR----LVANPGCYPTSVQLPLVPLIKASLIEL 215

Query: 230 *SHCI*KYHH*RKVWREWSS--LYTELTEGIMSYGVTRHRH 268
            +  I          R      L+TE+TEG+ SYGVT HRH
Sbjct: 216 KNIIIDAKSGVSGAGRSAKENLLFTEVTEGLNSYGVTLHRH 256


>Glyma20g01220.1 
          Length = 391

 Score =  224 bits (572), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/281 (48%), Positives = 176/281 (62%), Gaps = 38/281 (13%)

Query: 1   MSTSVFNSVYLDGGCLCKGQVKFSTLRKRNEHRQCVVRSAALSTRSLQIRNSKQEKEARV 60
           MS   F+S++       KG   F  +RK+  H + +V+ ++ S      +N+      RV
Sbjct: 1   MSAISFSSIHFHTWKNPKG---FGKVRKQ-PHGKLLVKCSSQSGNPSSSQNA-----VRV 51

Query: 61  ALLGASGYTGAEIIRLLANHPFFEISVMTADKNAGKSIESVFPHFISKKDLPVLVSTNDA 120
            ++GASGYTG+E++RLLANHP F I++MTAD+ AG+ I SVFPH +S  DLP L+S  DA
Sbjct: 52  GVVGASGYTGSEVLRLLANHPQFGIALMTADRKAGQPISSVFPH-LSTWDLPDLISIKDA 110

Query: 121 SFSDVDAVFCCLPHGTTQEIIKGLPRKLKIVDLSAVWFETTIKTDFRLRDISEYEEWYGQ 180
           +FSDVDAVFCCLPHGTTQEIIKGLP+ LKIVDLSA         DFRL+D+SEYEEWYGQ
Sbjct: 111 NFSDVDAVFCCLPHGTTQEIIKGLPKHLKIVDLSA---------DFRLKDLSEYEEWYGQ 161

Query: 181 SHRAPDLQEEAIYGLTEIFQKGNKICTASC*SWLLSNINSTPS-----------CSFTKG 229
            HRAPDLQ+EAIYGLTE+ ++  +I  A     L++N    P+            S  + 
Sbjct: 162 PHRAPDLQKEAIYGLTEVLRE--EIQNAR----LVANPGCYPTSVQLPLVPLIKASLIEL 215

Query: 230 *SHCI*KYHH*RKVWREWSS--LYTELTEGIMSYGVTRHRH 268
            +  I          R      L+TE+TEG+ SYGVTRHRH
Sbjct: 216 KNIIIDAKSGVSGAGRSAKENLLFTEVTEGLNSYGVTRHRH 256


>Glyma08g08370.1 
          Length = 231

 Score =  145 bits (366), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 120/197 (60%), Gaps = 40/197 (20%)

Query: 23  FSTLRKRNEHRQCVVRSAALSTRSLQIRNSKQEKEARVALLGASGYTGAEIIRLLANHPF 82
           F  +RK+ + +  V  S    ++SL + +S  + E RV +LGASGY+G+E+++LLANHP 
Sbjct: 2   FGKVRKQRDGKLLVKGS----SKSLNLTSS--QNEVRVDVLGASGYSGSEVLQLLANHPQ 55

Query: 83  FEISVMTADKNAGKSIESVFPHF--ISKKDLPVLVSTNDASFSDVDAVFCCLPHGTTQ-- 138
           F I++MTAD+ +  +     P F  +   DLP L++  DA+FSD+D VFCCLPHGTTQ  
Sbjct: 56  FGIALMTADRKSWAANLFCIPTFEHLGLGDLPDLIAIKDANFSDLDVVFCCLPHGTTQFA 115

Query: 139 --------------EIIKGLPRKLKIVDLSAVWFETTIKTDFRLRDISEYEEWYGQSHRA 184
                         +IIKGL + L+IVDLSA         DF L+D+SEYEEWYGQ    
Sbjct: 116 KRALVKVYQISMLKKIIKGLAKDLRIVDLSA---------DFHLKDLSEYEEWYGQ---- 162

Query: 185 PDLQEEAIYGLTEIFQK 201
              ++  +YGLTE+ ++
Sbjct: 163 ---KKLYMYGLTEVLRE 176