Jatropha Genome Database

JcCA0146401.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146401.20 + phase: 0 
         (193 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g37390.1                                                        56   3e-08
Glyma17g03230.1                                                        55   6e-08

>Glyma07g37390.1 
          Length = 177

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 2/47 (4%)

Query: 119 WNFDRFG-GQNWDEXXXXXXXRFAYGFVYEVIYWIALSTCMHFAFEK 164
           WNF+RFG G NWDE         A+ FVY+V+ WI LS C+HFAF++
Sbjct: 106 WNFNRFGSGHNWDEPSSSVPDP-AFDFVYQVLSWIMLSNCLHFAFKR 151


>Glyma17g03230.1 
          Length = 185

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%)

Query: 119 WNFDRFGG-QNWDEXXXXXXXRFAYGFVYEVIYWIALSTCMHFAFEK 164
           WNF+RFGG  NWDE         A+ FVY+V+ WI LS C+HF+F++
Sbjct: 114 WNFNRFGGGNNWDEPSSSVPDP-AFDFVYQVLSWIMLSNCLHFSFKR 159