Jatropha Genome Database

JcCA0146281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146281.20 + phase: 0 
         (89 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g06010.1                                                        78   3e-15
Glyma04g05010.1                                                        53   7e-08
Glyma06g05090.1                                                        52   1e-07

>Glyma07g06010.1 
          Length = 90

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 48/59 (81%), Gaps = 2/59 (3%)

Query: 11 GFISCDKLDRVANWVGSNVASAFFASLERCSCINLNTADLEDEDDEGAKDRPLMLCKPT 69
          GF+SCDKLDRVANWVG+NVASAFFASLERCSCINL+    ++EDD    DRPL L  PT
Sbjct: 23 GFMSCDKLDRVANWVGANVASAFFASLERCSCINLSIK--DNEDDTNNDDRPLFLSHPT 79


>Glyma04g05010.1 
          Length = 122

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 2  ENKNNNSSSGFISCDKLDRVANWVGSNVASAFFASLERCSCINLNTADLEDEDDEGAKDR 61
          E++ +++ +   +C K D VA W  + V +AFFASL RCSCI + T    +ED + A D 
Sbjct: 27 ESRVSSTQASSSACGKFDGVAMWFINGVTTAFFASLNRCSCIRIAT----EEDGDDANDL 82

Query: 62 PLMLCKPTIR 71
          PLML    +R
Sbjct: 83 PLMLNDGNLR 92


>Glyma06g05090.1 
          Length = 118

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 14 SCDKLDRVANWVGSNVASAFFASLERCSCINLNTADLEDEDDEGAKDRPLMLCKPTIRDN 73
          +C K D VA W  + V +AFFASL RCSCI + T    +ED + A D PLML    +R +
Sbjct: 36 ACGKFDGVAMWFINGVTTAFFASLNRCSCIRIAT----EEDGDDANDLPLMLNDGNLRQD 91