Jatropha Genome Database

JcCA0146281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146281.10 - phase: 0 /TE
         (228 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g29590.1                                                        60   2e-09

>Glyma13g29590.1 
          Length = 547

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 89  GGVIRNTSGYWVTGFLVRLGTCSSXXXXXXXXXXXXRCAWDAECRKVVVEMDSLMSIQMI 148
           GG++R++SG ++ GF V LG  S             + AWD  C+KV V++DS  ++ ++
Sbjct: 404 GGLVRDSSGCYLGGFTVNLGNTSVTLAELWGVVHGLKLAWDLGCKKVKVDIDSGNALGLV 463

Query: 149 K-APANDNLRFAGILQQCRALLSKPCTIVFKYIYRDGNRVADALLIWQCIHMLN 201
           +  P  ++  FA ++ +   L+ K   + F +++R+ NR AD L      H L 
Sbjct: 464 RHGPVANDPAFA-LVSEINELVRKEWLVEFSHVFRESNRAADKLAHLGHSHSLE 516