Jatropha Genome Database

JcCA0145721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145721.10 + phase: 1 /partial
         (154 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g28920.1                                                       157   3e-39
Glyma10g38860.1                                                       157   4e-39
Glyma05g09360.1                                                        49   3e-06
Glyma19g00890.1                                                        47   8e-06

>Glyma20g28920.1 
          Length = 595

 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/172 (56%), Positives = 121/172 (70%), Gaps = 22/172 (12%)

Query: 2   GSDKTQDDGTFPSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLAAPEDYLLVS 61
           GSDK Q  G    PS+IAAGLSSGHC+LFD +SGNVI+SWRAHDGYVTKLAAPE++LLVS
Sbjct: 427 GSDKMQAGGISTLPSFIAAGLSSGHCKLFDAKSGNVISSWRAHDGYVTKLAAPEEHLLVS 486

Query: 62  SSLDRTLRIWDLRSPLFLK-VIQMGYP--VSLFGV--KMLFRFPKIRLGF---------- 106
           SSLDRTLR+WDLR  L L+ +I  G+   +S F V  + +    + R+G           
Sbjct: 487 SSLDRTLRVWDLRMNLPLQPIIFRGHSDGISSFSVWGQDVISISRNRIGLLSLSKSANET 546

Query: 107 ----QLYPDLLKKLYAVDHGMKNLSVLSSISILPFSRLFVVGTEDGYLRICC 154
                + P   ++LY  D+G ++LS LSSISILPFSRLF++GTEDGYLRICC
Sbjct: 547 DGQHHISP---QRLYISDNGQRSLSALSSISILPFSRLFLIGTEDGYLRICC 595


>Glyma10g38860.1 
          Length = 596

 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 120/169 (71%), Gaps = 16/169 (9%)

Query: 2   GSDKTQDDGTFPSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLAAPEDYLLVS 61
           GSDK Q  G    PS+IAAGLSSGHC+LFD +SGNVI+SWRAHDGYVTKLAAPE++LLVS
Sbjct: 428 GSDKMQAGGISTFPSFIAAGLSSGHCKLFDAKSGNVISSWRAHDGYVTKLAAPEEHLLVS 487

Query: 62  SSLDRTLRIWDLRSPLFLK-VIQMGYP--VSLFGV--KMLFRFPKIRLG---FQLYPDLL 113
           SSLDRTLR+WDLR  L  + +I  G+   +S F +  + +    + R+G       P+  
Sbjct: 488 SSLDRTLRVWDLRMNLSSQPIIFRGHSDGISSFSIWGQDVISISRNRIGLLSLSKSPNET 547

Query: 114 --------KKLYAVDHGMKNLSVLSSISILPFSRLFVVGTEDGYLRICC 154
                   +KLY  D+G ++LS LSSISILPFSRLF++GTEDGYLRICC
Sbjct: 548 DGQHHISPQKLYVSDNGQRSLSALSSISILPFSRLFLIGTEDGYLRICC 596


>Glyma05g09360.1 
          Length = 526

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 13  PSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLA-APEDYLLVSSSLDRTLRIW 71
           P   W+ +G      +L+DL +G ++  ++ H+G V  +   P ++LL + S DRT++ W
Sbjct: 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQVQCIDFHPNEFLLATGSADRTVKFW 212

Query: 72  DLRS 75
           DL +
Sbjct: 213 DLET 216


>Glyma19g00890.1 
          Length = 788

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 13  PSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLA-APEDYLLVSSSLDRTLRIW 71
           P   W+ +G      +L+DL +G ++  ++ H+G +  +   P ++LL + S DRT++ W
Sbjct: 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPNEFLLATGSADRTVKFW 212

Query: 72  DLRS 75
           DL +
Sbjct: 213 DLET 216