Jatropha Genome Database

JcCA0144211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144211.10 + phase: 1 /partial/short
         (33 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g04650.1                                                        66   1e-11

>Glyma11g04650.1 
          Length = 438

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 30/33 (90%)

Query: 1   LMATYHAKNEYCLFSDMCQGYRVFVSVISQLEE 33
           LMATYHA+NEYCLF+DM QGYRVF  +ISQLEE
Sbjct: 406 LMATYHAQNEYCLFTDMSQGYRVFARIISQLEE 438