Jatropha Genome Database

JcCA0143661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143661.10 + phase: 0 /pseudo/partial
         (221 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g04650.1                                                       224   6e-59
Glyma01g40660.1                                                       113   2e-25

>Glyma11g04650.1 
          Length = 438

 Score =  224 bits (571), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 102/113 (90%), Positives = 109/113 (96%)

Query: 109 GVGVDALVKDGLLNKLKGGPLFWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLAHKAIN 168
           GVGVDALVKDGLLNKLK GPL+WIDTADKQPC+GTGGMIPWKLHVTG+LFHSGLAHKAIN
Sbjct: 173 GVGVDALVKDGLLNKLKDGPLYWIDTADKQPCVGTGGMIPWKLHVTGRLFHSGLAHKAIN 232

Query: 169 PLELAMEALKEIQSRFYRDFPPHPKEKVYGFATPSTMKPTQWSYPGGGINQIP 221
            LELAM+ALKEIQ RFY DFPPHP+E+VYGFATPST+KPTQWSYPGGGINQIP
Sbjct: 233 ALELAMDALKEIQLRFYSDFPPHPQEQVYGFATPSTLKPTQWSYPGGGINQIP 285



 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 30/33 (90%)

Query: 8  LGELNRESFVSLLRKIIGESKHVQNNPPELIPR 40
          LG+L R+SFV+LL K+I ESK+VQNNPPELIP+
Sbjct: 11 LGDLERDSFVALLSKLIAESKYVQNNPPELIPQ 43


>Glyma01g40660.1 
          Length = 357

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)

Query: 109 GVGVDALVKDGLLNKLKGGPLFWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLAHK 165
           GVGVDALVKDGLLNKLK GPL+WIDTADKQP +GTGGMIPWKLHVTG+LFHSGLAHK
Sbjct: 167 GVGVDALVKDGLLNKLKDGPLYWIDTADKQPGVGTGGMIPWKLHVTGRLFHSGLAHK 223