Jatropha Genome Database

JcCA0143091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143091.30 + phase: 0 
         (191 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g17740.1                                                       151   4e-37
Glyma04g37350.1                                                        85   4e-17
Glyma04g37340.1                                                        80   1e-15

>Glyma06g17740.1 
          Length = 168

 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 116/179 (64%), Gaps = 17/179 (9%)

Query: 13  KTTQELALEGQKHLEETIQAAYQILSSMNDELCNPNLWXXXXXXXXXXXXXXXXXPITAA 72
           KTTQELA+EGQK+LEETI+ A+QILSSMNDELCNP LW                   +++
Sbjct: 7   KTTQELAMEGQKYLEETIENAFQILSSMNDELCNPVLWSTSPSA-------------SSS 53

Query: 73  TNGDVXXXXXXXXXXXXXXXXXXXTCNGALDEARFRYKNSVAALREVLAAIPNSQKAKAF 132
            N D                       GAL++AR RYK +VAALR +L AIPNSQKA A 
Sbjct: 54  PNADATSENSNHHADATTAAA---GGGGALEQARSRYKKAVAALRTILTAIPNSQKANA- 109

Query: 133 ETTNSSASPADHAEVEKLEEQASNLRKELVNKNACLKLLIDQLRDLITDISTWQSPCSV 191
              +S+ASPAD AE++KLEE+AS+LR+EL NKN  LK LIDQLRDLITDISTW SP S 
Sbjct: 110 FNASSAASPADEAEIDKLEERASSLRRELANKNLHLKTLIDQLRDLITDISTWHSPFST 168


>Glyma04g37350.1 
          Length = 54

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 47/54 (87%)

Query: 138 SASPADHAEVEKLEEQASNLRKELVNKNACLKLLIDQLRDLITDISTWQSPCSV 191
           +ASPAD AE++KLEE+AS+LR+EL NKN  LK LIDQLRDLITDISTWQSP S 
Sbjct: 1   AASPADEAEIDKLEERASSLRRELANKNLHLKTLIDQLRDLITDISTWQSPFST 54


>Glyma04g37340.1 
          Length = 102

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 63/116 (54%), Gaps = 18/116 (15%)

Query: 13  KTTQELALEGQKHLEETIQAAYQILSSMNDELCNPNLWXXXXXXXXXXXXXXXXXPITAA 72
           KTTQELA+EGQ++LEETI+ A+QILSSMNDELCNP LW                 P T+ 
Sbjct: 5   KTTQELAMEGQEYLEETIENAFQILSSMNDELCNPVLW--------------STSPSTSP 50

Query: 73  TNGDVXXXXXXXXXXXXXXXXXXXTCNGALDEARFRYKNSVAALREVLAAIPNSQK 128
            N D                        AL+EAR RYK +V ALR +L AIP SQK
Sbjct: 51  -NADATSDNSNHHADASAASAAAGG---ALEEARARYKKAVTALRTILTAIPTSQK 102