Jatropha Genome Database

JcCA0142871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142871.10 - phase: 0 /pseudo/partial
         (201 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g08000.1                                                       211   3e-55
Glyma17g12990.2                                                       202   3e-52
Glyma17g12990.1                                                       201   4e-52

>Glyma05g08000.1 
          Length = 464

 Score =  211 bits (538), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/122 (79%), Positives = 110/122 (90%)

Query: 1   MFDESKFDVQLKLWALRIPREHCKVATRLLNGYLLDKARVKPITEDPTCEKNRFMILSER 60
           M DESKF+V  KLWALRIP +HCK+ATR+LNGYLLDK RVKPITEDPTC+KNR++ILS+ 
Sbjct: 1   MLDESKFEVHFKLWALRIPCQHCKLATRILNGYLLDKPRVKPITEDPTCDKNRYLILSDN 60

Query: 61  VQNTDLTDIPVEKLDELKKLCEIEVVPYSMTLGYSYWSADHILKQILPPGVEIPSSFETI 120
           V N DL+DIP +KLDELK LCEIEVVPYS+TLGYSYWSADH+LKQILP GVE+PSSFETI
Sbjct: 61  VHNQDLSDIPKQKLDELKGLCEIEVVPYSLTLGYSYWSADHVLKQILPTGVEVPSSFETI 120

Query: 121 VK 122
           V 
Sbjct: 121 VN 122


>Glyma17g12990.2 
          Length = 404

 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 110/130 (84%), Gaps = 8/130 (6%)

Query: 1   MFDESKFDVQLKLWALRIPREHCKVATRLLNGYLLDKARVKPITEDPTCEKNRFMILSER 60
           M DESKF+V LKLWALRIP +HCK+ATR+LNGYLLDK RVKPI EDPTC+KNR++ILS+ 
Sbjct: 1   MLDESKFEVHLKLWALRIPCQHCKLATRILNGYLLDKPRVKPIAEDPTCDKNRYLILSDN 60

Query: 61  VQNTDLTDIPVEKLDELKKLCEIEVVPYSMTLGYSYWSA--------DHILKQILPPGVE 112
           V N DL+DIP +KLDELK LCEIE+VPYS+TLGYS+WSA        +H+LKQILP GVE
Sbjct: 61  VHNQDLSDIPKQKLDELKGLCEIEIVPYSLTLGYSHWSAGDFLIICPNHVLKQILPTGVE 120

Query: 113 IPSSFETIVK 122
           +PSSFETIV 
Sbjct: 121 VPSSFETIVN 130


>Glyma17g12990.1 
          Length = 516

 Score =  201 bits (511), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 110/130 (84%), Gaps = 8/130 (6%)

Query: 1   MFDESKFDVQLKLWALRIPREHCKVATRLLNGYLLDKARVKPITEDPTCEKNRFMILSER 60
           M DESKF+V LKLWALRIP +HCK+ATR+LNGYLLDK RVKPI EDPTC+KNR++ILS+ 
Sbjct: 1   MLDESKFEVHLKLWALRIPCQHCKLATRILNGYLLDKPRVKPIAEDPTCDKNRYLILSDN 60

Query: 61  VQNTDLTDIPVEKLDELKKLCEIEVVPYSMTLGYSYWSA--------DHILKQILPPGVE 112
           V N DL+DIP +KLDELK LCEIE+VPYS+TLGYS+WSA        +H+LKQILP GVE
Sbjct: 61  VHNQDLSDIPKQKLDELKGLCEIEIVPYSLTLGYSHWSAGDFLIICPNHVLKQILPTGVE 120

Query: 113 IPSSFETIVK 122
           +PSSFETIV 
Sbjct: 121 VPSSFETIVN 130