Jatropha Genome Database

JcCA0142031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0142031.20 + phase: 0 
         (169 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g46410.1                                                        96   1e-20
Glyma09g39780.1                                                        96   2e-20

>Glyma18g46410.1 
          Length = 133

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 16/121 (13%)

Query: 49  MAKKILEYRSTFPNQLEVTLASVLSAQRPFLPSMDSGSDLGPAGEFNPGLEEQVNSSKPT 108
           MA +IL+YR+  P+QL  TL S+L AQRPFL               +PG  EQ  S + +
Sbjct: 27  MAHRILDYRTKLPDQLNATLRSILDAQRPFL---------------SPGTSEQNISREES 71

Query: 109 SLTEGDQKITEKVRLLKDKISSNVSAMPTVLNRMKECMSKIDNLDSHVGTL-HPFSKKKK 167
           S    D +  +K++LL +KISSN SAMP VL RMK+C+++I+  DS+  ++ HP  K+KK
Sbjct: 72  SSAPEDPETAKKLKLLNEKISSNCSAMPIVLKRMKDCIARIEKFDSYNDSMIHPAFKRKK 131

Query: 168 T 168
           T
Sbjct: 132 T 132


>Glyma09g39780.1 
          Length = 134

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 74/121 (61%), Gaps = 16/121 (13%)

Query: 49  MAKKILEYRSTFPNQLEVTLASVLSAQRPFLPSMDSGSDLGPAGEFNPGLEEQVNSSKPT 108
           MA KIL+YR+T P+QL  TL S+L AQRPFL               +PG  EQ  S + +
Sbjct: 28  MAHKILDYRTTLPDQLNSTLRSILDAQRPFL---------------SPGASEQNISREES 72

Query: 109 SLTEGDQKITEKVRLLKDKISSNVSAMPTVLNRMKECMSKIDNLDSH-VGTLHPFSKKKK 167
           S    D +  + ++LL +KISSN SAMP VL RMK+C+++I+  DS+    +HP  K+KK
Sbjct: 73  SSAPEDPETAKILKLLNEKISSNCSAMPIVLKRMKDCIARIEKFDSYNDAMIHPAFKRKK 132

Query: 168 T 168
           T
Sbjct: 133 T 133