Jatropha Genome Database

JcCA0141501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0141501.10 + phase: 2 /partial
         (103 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g04650.1                                                       181   2e-46

>Glyma11g04650.1 
          Length = 438

 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 83/103 (80%), Positives = 97/103 (94%)

Query: 1   IADVKNKLQEYVDDINENIEKLDTRGPVSKYILPDENLRGSLTLTFEEAMSGVACDLESR 60
           + DV  KLQEYVDDINE+ +KL++RGPVSKY+LPDEN+RG LTL+F+EA+SGVACDL SR
Sbjct: 302 VKDVMKKLQEYVDDINESAQKLESRGPVSKYVLPDENIRGRLTLSFDEALSGVACDLNSR 361

Query: 61  GFHVLCKATEKVVGHVKPYSITGSLPLIRELQDEGFDVQTAGY 103
           GFHVLCKATE+VVG+VKPYSITGSLPLIRELQ+EGFDVQT+GY
Sbjct: 362 GFHVLCKATEEVVGYVKPYSITGSLPLIRELQEEGFDVQTSGY 404