Jatropha Genome Database
- JcCA0140901.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0140901.10 + phase: 0 /pseudo/partial
(99 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma01g41230.2 52 1e-07
Glyma01g41230.1 52 1e-07
Glyma11g04180.2 50 5e-07
Glyma11g04180.1 50 6e-07
Glyma17g15950.2 47 4e-06
Glyma17g15950.1 47 5e-06
Glyma17g15950.3 47 5e-06
>Glyma01g41230.2
Length = 285
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 1 MYKDXXXXXXXXXXXEIERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSAGKSQ 60
MY++ ++RKRIND LDK LE+SSPSTSRA KDR S +A K
Sbjct: 1 MYRERGGVGSKSEVTSVDRKRINDVLDKQLERSSPSTSRAAAINGKDRSSSSLLAAAK-- 58
Query: 61 LDHRDPRSASLS 72
D RSAS++
Sbjct: 59 ----DSRSASVT 66
>Glyma01g41230.1
Length = 285
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 1 MYKDXXXXXXXXXXXEIERKRINDALDKHLEKSSPSTSRALNNKDKDRLSVPSTSAGKSQ 60
MY++ ++RKRIND LDK LE+SSPSTSRA KDR S +A K
Sbjct: 1 MYRERGGVGSKSEVTSVDRKRINDVLDKQLERSSPSTSRAAAINGKDRSSSSLLAAAK-- 58
Query: 61 LDHRDPRSASLS 72
D RSAS++
Sbjct: 59 ----DSRSASVT 66
>Glyma11g04180.2
Length = 254
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 11/75 (14%)
Query: 1 MYKDXXXXXXXXXXXEIERKRINDALDKHLEKSSPSTSR---ALNNKDKDRLSVPSTSAG 57
MY++ ++RKRIND LDK LE+SSPSTSR A+N KD+ S+ + +
Sbjct: 1 MYRERGGVGSKSEVTSVDRKRINDVLDKQLERSSPSTSRAAGAINGKDRSSSSLLAAA-- 58
Query: 58 KSQLDHRDPRSASLS 72
+D RSAS++
Sbjct: 59 ------KDSRSASVT 67
>Glyma11g04180.1
Length = 286
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 11/75 (14%)
Query: 1 MYKDXXXXXXXXXXXEIERKRINDALDKHLEKSSPSTSR---ALNNKDKDRLSVPSTSAG 57
MY++ ++RKRIND LDK LE+SSPSTSR A+N KD+ S+ + +
Sbjct: 1 MYRERGGVGSKSEVTSVDRKRINDVLDKQLERSSPSTSRAAGAINGKDRSSSSLLAAA-- 58
Query: 58 KSQLDHRDPRSASLS 72
+D RSAS++
Sbjct: 59 ------KDSRSASVT 67
>Glyma17g15950.2
Length = 263
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 18 ERKRINDALDKHLEKSSPSTSRALNNKDKD 47
+RKRIND LDKHLE+SSPSTSR +N K+
Sbjct: 19 DRKRINDVLDKHLERSSPSTSRPINTASKN 48
>Glyma17g15950.1
Length = 264
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 18 ERKRINDALDKHLEKSSPSTSRALNNKDKD 47
+RKRIND LDKHLE+SSPSTSR +N K+
Sbjct: 19 DRKRINDVLDKHLERSSPSTSRPINTASKN 48
>Glyma17g15950.3
Length = 261
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 18 ERKRINDALDKHLEKSSPSTSRALNNKDKD 47
+RKRIND LDKHLE+SSPSTSR +N K+
Sbjct: 19 DRKRINDVLDKHLERSSPSTSRPINTASKN 48