Jatropha Genome Database

JcCA0139851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139851.10 + phase: 0 
         (188 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g02300.1                                                        47   8e-06
Glyma10g32190.1                                                        47   9e-06

>Glyma08g02300.1 
          Length = 520

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 9   KAYYANLSEKQKRLAKDFFNEMDKDGDGKITFDEYEQRIKPKKGFNPIASSD---FFRKL 65
           K    NLSE++    K+ F  MD D  G ITF+E +  + PK G + ++ S+        
Sbjct: 359 KVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGL-PKLG-SKLSESEVRQLMEAA 416

Query: 66  DKDGNGTLDFDEFVT 80
           D DGNGT+D+ EF+T
Sbjct: 417 DIDGNGTIDYIEFIT 431


>Glyma10g32190.1 
          Length = 150

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 15 LSEKQKRLAKDFFNEMDKDGDGKITFDEYEQRIKPKKGFNPIASS--DFFRKLDKDGNGT 72
          LSE+Q    K+ F   DKDGDG IT +E    I+     NP      D   ++D DGNGT
Sbjct: 5  LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQ-NPTEEELQDMISEVDADGNGT 63

Query: 73 LDFDEFVTL 81
          ++FDEF++L
Sbjct: 64 IEFDEFLSL 72