Jatropha Genome Database

JcCA0139601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0139601.20 + phase: 0 /TE/partial
         (257 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g42470.1                                                        91   1e-18
Glyma01g07740.1                                                        60   2e-09
Glyma14g17420.1                                                        58   1e-08
Glyma10g16060.1                                                        49   5e-06

>Glyma15g42470.1 
          Length = 1094

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 39/276 (14%)

Query: 1   MSAMRCEIEKFDGRMNLALWQVQVKYVLIQSGLHKVLKGKPVSEKNSGKDSGSRDSEKSK 60
           M + + E+EKF G+ +  LW+++++ +L+Q  L + L G+   EK               
Sbjct: 1   MGSAKYEVEKFTGQNDFGLWRLKMRALLVQQDLVEALDGEAKLEK--------------M 46

Query: 61  ISDEEWEELDIKAASQIRMCXXXXXXXXXXXXXXXXXXXXXXXXXYQGKNISNRLYLKEQ 120
           ++D + + L  KA   I +                          Y  K++ NRLYLK+ 
Sbjct: 47  MADGDKKALLQKAHGAIILSLGDKVLRQVSKETTAAGVWSKLEGLYMTKSLVNRLYLKQS 106

Query: 121 FHMLKMAEGTKLSDHLSVLNDIVSELETLGVQTEDEDKALRLILSLPSTYKHMKPVLKYG 180
            +  KM E   + + L + N ++ +LE + V  +DED+AL L+  LP +Y H K  L +G
Sbjct: 107 LYSFKMHEDRSVGEQLDLFNKLILDLENIDVTIDDEDQALLLLCYLPKSYSHFKETLLFG 166

Query: 181 SKEVVYADVISKLITEERRLNEMKNKSYEDSALSVGTXXXXXXXXX-------------- 226
              V   +V + L ++E  LNE K K    S   +                         
Sbjct: 167 RDSVSLDEVQTALNSKE--LNERKEKKSSASGEGLTARGKTFKKDSEFDKKKQKPENQKN 224

Query: 227 -----XXVVCWDCGQTGHVRKDCP----NGGADSAR 253
                  + C+ C + GH RK CP    NGG+++ +
Sbjct: 225 GEGNIFKIRCYHCKKEGHTRKVCPERQKNGGSNNRK 260


>Glyma01g07740.1 
          Length = 334

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 20/218 (9%)

Query: 43  SEKNSGKDSGSRDSEKSKISDEEWEELDIKAASQIRMCXXXXXXXXXXXXXXXXXXXXXX 102
           S ++ G D    D   + I++ +W ++  +  S IR+                       
Sbjct: 7   SGEHKGLDQALEDERPTSINETKWTKIQRRGVSTIRLALAFEIKHNALKETTPKALWEKL 66

Query: 103 XXXYQGKNISNRLYLKEQFHMLKMAEGTKLSDHLSVLNDIVSELETLGVQTEDEDKALRL 162
              Y  K+++NRL LK   + LK   G  L DH++  N  VS+L     +   E   L L
Sbjct: 67  ENIYVSKSLTNRLCLKMDLYQLKTEMGGDLDDHINKFNREVSQLLNANDKISYEGHVLLL 126

Query: 163 ILSLPSTYKHMKPVLKYGSKEVVYADVISKLITEERRLNEMKNKSYEDSALSV------- 215
           + SLP ++K +  +L    +  +  D ++ ++ E  R+    N  YE +A++V       
Sbjct: 127 LASLPRSFKALVQMLLV-RRSTLNLDEVTTVLRENERMMRTGNVDYEHNAIAVVESERGR 185

Query: 216 ------------GTXXXXXXXXXXXVVCWDCGQTGHVR 241
                                    + C+ CG+ GHV+
Sbjct: 186 NHSRSHDGPRGRSKLQSHPQQDMSNIQCYYCGENGHVQ 223


>Glyma14g17420.1 
          Length = 1459

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 25/149 (16%)

Query: 128 EGTKLSDHLSVLNDIVSELETLGVQTEDEDKALRLILSLPSTYKHMKPVLKYGSKEVVYA 187
           E   + + L + N ++ +LE + V  +DED+AL L+ SLP +Y H K  L +G   V   
Sbjct: 420 EDRSVEEQLDLFNKLILDLENIDVTIDDEDQALLLLCSLPKSYSHFKETLLFGRDSVSLD 479

Query: 188 DVISKLITEERRLNEMKNKSYEDSA---LSVGTXXXXXXX----------------XXXX 228
            V + L  + ++LNE K K    S    ++ G                            
Sbjct: 480 KVQAAL--KSKKLNERKEKKSSTSGEGLIARGKTFNKDSKFDKNKQKPENQKNDEGKIFK 537

Query: 229 VVCWDCGQTGHVRKDCP----NGGADSAR 253
           + C+ C + GH RK CP    NGG+++ +
Sbjct: 538 IRCYHCKKEGHTRKVCPERQKNGGSNNRK 566


>Glyma10g16060.1 
          Length = 879

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 21/130 (16%)

Query: 126 MAEGTKLSDHLSVLNDIVSELETLGVQTEDEDKALRLILSLPSTYKHMKPVLKYGSKEVV 185
           M EGT L DHL  LN I+ EL  + V+ ED+D A+ L+ SLP +Y+     L  G + V 
Sbjct: 1   MKEGTSLKDHLDELNSILMELRDIDVKIEDDDAAMILLASLPPSYESFVNSLSVGKECVT 60

Query: 186 YADVISKLITEERRLNEMKNKSYEDSALSVGTXXXXXXXXXXXV---------------- 229
             +V S L      L E+++K+  +S  S G+                            
Sbjct: 61  MEEVKSSLY-----LRELRSKASGNSEESNGSGLVVSNSIKNIKKKVFKGKKKTHVNPKD 115

Query: 230 VCWDCGQTGH 239
           +C  C + GH
Sbjct: 116 ICNYCKEPGH 125