Jatropha Genome Database

JcCA0138821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0138821.10 + phase: 0 
         (73 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g26910.1                                                        55   1e-08
Glyma08g15740.2                                                        53   9e-08
Glyma08g15740.1                                                        52   1e-07
Glyma15g29630.1                                                        52   2e-07
Glyma15g29630.2                                                        52   2e-07
Glyma12g02740.1                                                        49   1e-06

>Glyma07g26910.1 
          Length = 329

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/28 (92%), Positives = 26/28 (92%)

Query: 43 ARKVLKADREKLRRDRLNEQFIELGNAL 70
          ARKVLKADREKLRRDRLNE F ELGNAL
Sbjct: 55 ARKVLKADREKLRRDRLNEHFQELGNAL 82


>Glyma08g15740.2 
          Length = 282

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 25/28 (89%)

Query: 43 ARKVLKADREKLRRDRLNEQFIELGNAL 70
          ARK  KADREKLRRDRLNEQF+ELGN L
Sbjct: 6  ARKTQKADREKLRRDRLNEQFVELGNIL 33


>Glyma08g15740.1 
          Length = 283

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 25/28 (89%)

Query: 43 ARKVLKADREKLRRDRLNEQFIELGNAL 70
          ARK  KADREKLRRDRLNEQF+ELGN L
Sbjct: 6  ARKTQKADREKLRRDRLNEQFVELGNIL 33


>Glyma15g29630.1 
          Length = 321

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 25/28 (89%)

Query: 43 ARKVLKADREKLRRDRLNEQFIELGNAL 70
          ARK  KADREKLRRDR+NEQF+ELGN L
Sbjct: 20 ARKTQKADREKLRRDRINEQFVELGNIL 47


>Glyma15g29630.2 
          Length = 281

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/28 (82%), Positives = 25/28 (89%)

Query: 43 ARKVLKADREKLRRDRLNEQFIELGNAL 70
          ARK  KADREKLRRDR+NEQF+ELGN L
Sbjct: 6  ARKTQKADREKLRRDRINEQFVELGNIL 33


>Glyma12g02740.1 
          Length = 275

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/28 (78%), Positives = 23/28 (82%)

Query: 43 ARKVLKADREKLRRDRLNEQFIELGNAL 70
          ARK  KADREKLRRDR N QF+ELGN L
Sbjct: 6  ARKTQKADREKLRRDRFNVQFVELGNIL 33