Jatropha Genome Database

JcCA0135781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0135781.10 - phase: 0 /partial
         (261 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g03040.1                                                       310   9e-85
Glyma04g11820.1                                                        89   5e-18
Glyma04g11990.1                                                        72   8e-13

>Glyma20g03040.1 
          Length = 651

 Score =  310 bits (794), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 164/278 (58%), Positives = 195/278 (70%), Gaps = 25/278 (8%)

Query: 1   DSSKTLWFGRDAFGRRSLLVHWPTVKDPQFMLSSVSPFSAVDQSSG-ADLGVEDCTEPNF 59
           DSS+TLWFGRDAFGRRSLLVHWPTV D  F+LSSVSP S V Q+S   D     C   ++
Sbjct: 182 DSSRTLWFGRDAFGRRSLLVHWPTVDDSTFLLSSVSPVSPVQQASEYEDHNGIGCL--SY 239

Query: 60  WEELSCGIYSLSMAASKLHGCTFGEVKRHEWANTALINLIKWERVSVEPKPEELSFSC-- 117
           WEEL CGIYS+ + ASK  G   GEVK HE+ N+ L  LIKWER+SVEP  E+L   C  
Sbjct: 240 WEELPCGIYSVHVDASKTSGYLVGEVKIHEYTNSMLNELIKWERISVEPSSEDLHTFCHK 299

Query: 118 --------------------GLDQTSFSLPARNVLSALKKSVMLRTSLHTIFKAGTSDGG 157
                               G  Q +  +PA  +L+ALK+SV+ RTS++T+++A  S   
Sbjct: 300 LSLGQHAKHQPSSEAVPNKTGSIQPAIPMPAHILLNALKESVLRRTSMYTVYQAVISGIR 359

Query: 158 QEELVPVAVLFSGGLDSMILAALLDQCLDPSYGIDLLNVSFDGQFAPDRISAKAGVEELS 217
           QE+  PVA+LFSGGLDSMILAALLD+C+DPSY IDLLNVSFDGQ APDR SAKAG+ EL 
Sbjct: 360 QEKFFPVAILFSGGLDSMILAALLDKCMDPSYEIDLLNVSFDGQLAPDRKSAKAGLNELR 419

Query: 218 RIAPLRRWKLVEIDADLSKLKLEMKHVMALINPANTYM 255
           R+AP R+W+LVEIDADLS L  E  HVM+LINPANTYM
Sbjct: 420 RVAPSRKWRLVEIDADLSDLVFETSHVMSLINPANTYM 457


>Glyma04g11820.1 
          Length = 339

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 69/132 (52%), Gaps = 22/132 (16%)

Query: 2   SSKTLWFGRDAFGRRSLLVHWPTVKDPQFMLSSVSPFSAVDQSSGADLGVEDCTEPNFWE 61
           SS + W    AFGR SLLVHW TV D  F+LS VSP S +                 +WE
Sbjct: 96  SSTSRWCFHYAFGRWSLLVHWLTVDDSTFLLSPVSPVSLL---------------VIYWE 140

Query: 62  ELSCGIYSLSMAASKLHGCTFGEVKRHEWANTALINLIKWERVSVEPKPEELSFSCGLDQ 121
           EL CGIYS+ + ASK       EVK HE+ N+ L  LIKW+++  EP  E+L       Q
Sbjct: 141 ELPCGIYSMHVGASKSRVYLVSEVKIHEYTNSMLNELIKWDKIFFEPSSEDL-------Q 193

Query: 122 TSFSLPARNVLS 133
           T F +   N L+
Sbjct: 194 TFFRIYLVNTLA 205


>Glyma04g11990.1 
          Length = 110

 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 52/89 (58%), Gaps = 11/89 (12%)

Query: 11  DAFGRRSLLVHWPTVKDPQFMLSSVSPFSAVDQSSGADLGVEDCTEPNFWEELSCGIYSL 70
           DAFGR SLLVHW TV D  F+LS VS +          L ++ C   ++WEEL CGIYS+
Sbjct: 32  DAFGRWSLLVHWLTVDDSTFLLSPVSLYG---------LDIDGCL--SYWEELPCGIYSM 80

Query: 71  SMAASKLHGCTFGEVKRHEWANTALINLI 99
            + ASK       EVK HE+ N+ L  LI
Sbjct: 81  HVDASKSSVYLVSEVKIHEYTNSMLNELI 109