Jatropha Genome Database

JcCA0134311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0134311.10 + phase: 2 /partial
         (82 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g10680.1                                                        97   4e-21
Glyma05g27700.1                                                        95   1e-20
Glyma05g06540.1                                                        82   1e-16
Glyma19g22680.1                                                        79   1e-15
Glyma05g34920.1                                                        50   6e-07
Glyma08g04790.1                                                        48   3e-06

>Glyma08g10680.1 
          Length = 451

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 54/74 (72%), Gaps = 1/74 (1%)

Query: 1   AEGCQQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCWKQ-VNCQEEE 59
           AE CQ  EH+TQ CRACTLCI RC QCGRCINDSEYEETFCLELLCS C KQ V C E  
Sbjct: 376 AESCQGVEHTTQVCRACTLCIPRCSQCGRCINDSEYEETFCLELLCSSCSKQLVKCSERG 435

Query: 60  DGKISPPKAPAVCE 73
           D KI   K+  + E
Sbjct: 436 DRKIGSDKSVVIHE 449


>Glyma05g27700.1 
          Length = 463

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 1   AEGCQQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCWKQ-VNCQEEE 59
           AE CQ  EH+TQ CRACTLCI RC QCG CINDSEYEETFCLELLCS C KQ V C E E
Sbjct: 388 AESCQGVEHTTQICRACTLCIPRCSQCGCCINDSEYEETFCLELLCSSCSKQLVKCSERE 447

Query: 60  DGKISPPKAPAVCESS 75
           D KI   K+  + E S
Sbjct: 448 DRKIGSDKSAVIHEQS 463


>Glyma05g06540.1 
          Length = 439

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 46/62 (74%)

Query: 1   AEGCQQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCWKQVNCQEEED 60
           AE CQQK  ++Q CR CT+CIARC+ CGRCI D +YEETFCL+LLC +CW Q     E+ 
Sbjct: 358 AESCQQKHQASQLCRGCTICIARCIHCGRCIKDFDYEETFCLDLLCLNCWNQFLHCPEKG 417

Query: 61  GK 62
           GK
Sbjct: 418 GK 419


>Glyma19g22680.1 
          Length = 415

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 45/62 (72%)

Query: 1   AEGCQQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCWKQVNCQEEED 60
           AE CQ K  ++Q CR CT+CIARC+ CGRCI D +YEETFCL+LLC +CW Q     E+ 
Sbjct: 334 AESCQPKHQASQLCRGCTICIARCLHCGRCIKDFDYEETFCLDLLCLNCWNQFLHCPEKG 393

Query: 61  GK 62
           GK
Sbjct: 394 GK 395


>Glyma05g34920.1 
          Length = 316

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 2   EGCQQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCWKQV 53
           E C ++E    PCR C  CI RC  CG CI   E EE  C ++ C +CW Q+
Sbjct: 221 EHCTRREWPLAPCRGCNFCIPRCENCGGCIESGEVEEGACEDIFCLECWLQL 272


>Glyma08g04790.1 
          Length = 273

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 4   CQQKEHSTQPCRACTLCIARCVQCGRCINDSEYEETFCLELLCSDCWKQV 53
           C ++E    PCR C  CI +C  CG CI   E EE  C ++ C +CW Q+
Sbjct: 192 CTRREWPLAPCRGCNFCIPKCENCGGCIESGEVEEGDCEDIFCLECWLQI 241