Jatropha Genome Database

JcCA0131921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0131921.10 + phase: 0 /pseudo
         (339 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g26380.1                                                        73   5e-13

>Glyma14g26380.1 
          Length = 264

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 39/46 (84%)

Query: 236 HGGIPMPKQRGRKSKNDVLKKKMELAKKEQVDRFTKIAAPSGLLNG 281
           H GIP PK  GRKSKN++LKKKMELAK+EQV+RFTKIAAP+  + G
Sbjct: 17  HAGIPKPKHHGRKSKNEMLKKKMELAKREQVNRFTKIAAPTHCIQG 62