Jatropha Genome Database

JcCA0131361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0131361.10 - phase: 2 /TE/pseudo/partial
         (557 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g15130.2                                                        92   1e-18
Glyma08g10320.1                                                        63   1e-09
Glyma07g03280.1                                                        54   4e-07
Glyma10g23870.1                                                        54   7e-07

>Glyma09g15130.2 
          Length = 672

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 96/212 (45%), Gaps = 22/212 (10%)

Query: 334 KKKWLSYFKNIPPLYLVAIVFDPRCRMDVLCDYLTIYYDVLNLDVEDNVNINVLVHEVKQ 393
           K K+  Y+        VA V DPR +M ++  Y ++ Y    L+          + EV  
Sbjct: 462 KDKFDRYWSKCSLPLAVAAVLDPRFKMKLVEYYFSLIYGSTALE---------HIKEVSD 512

Query: 394 NIMQLYNEFXXXXXXXXXXXX---XXXXNIPQFSTQRVSGVDVAQQVLLQRQKRTRESSS 450
            I +L+N +                   +    S  R+ G D       Q Q      S 
Sbjct: 513 GIKELFNVYSICSTMIDQGSALPGSSLPSTSCSSRDRLKGFDRFLHETSQGQ------SM 566

Query: 451 ISEFDNYLTTSFEFSDNYADADFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAF 510
           IS+ D YL     F  N   +DF IL+WW  H   +PILS++A+ +L  P+ST+A E AF
Sbjct: 567 ISDLDKYLEEPI-FPRN---SDFNILNWWKVHMPRYPILSMMARDVLGTPMSTMAPELAF 622

Query: 511 SQGGNILDKTRSRMTPDSLEAQACVDDWTKAE 542
           S GG +LD +RS + PD+ EA  C  DW + E
Sbjct: 623 STGGRVLDSSRSSLNPDTREALICTQDWLQNE 654


>Glyma08g10320.1 
          Length = 736

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query: 473 FPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFSQGGNILDKTRSRMTPDSLEAQ 532
           F IL WW   +  + +L+ +A+ ILA PVS+V+ E AFS G ++LD+  S + P ++EA 
Sbjct: 612 FDILRWWKGKSTKYYVLAHMARDILAIPVSSVSFEDAFSTGDHVLDRYHSCLDPTTVEAL 671

Query: 533 ACVDDWTKAELR 544
            C   W    LR
Sbjct: 672 ICSKSWLSHNLR 683


>Glyma07g03280.1 
          Length = 661

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%)

Query: 472 DFPILDWWSRHANTFPILSLLAKQILAAPVSTVAVEQAFSQGGNILDKTRSRMTPDSLEA 531
           +F IL WW  +   +P LS +A  IL+ PVST++ +  F      +D  RS ++  +LEA
Sbjct: 591 EFDILSWWRVNGLKYPTLSRIASDILSLPVSTLSADSIFDMQIRKMDSYRSSLSSLTLEA 650

Query: 532 QACVDDWTKAE 542
             C  DW ++E
Sbjct: 651 LICAKDWFQSE 661


>Glyma10g23870.1 
          Length = 390

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 32/53 (60%)

Query: 486 FPILSLLAKQILAAPVSTVAVEQAFSQGGNILDKTRSRMTPDSLEAQACVDDW 538
           +P L  +AK ILA  VSTVA E AFS GG +L   RSR+   +LEA  C   W
Sbjct: 306 YPTLQAIAKDILAILVSTVASESAFSTGGQVLSPHRSRLQWTTLEALMCARSW 358