Jatropha Genome Database

JcCA0128511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0128511.10 + phase: 0 /partial
         (156 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g41430.1                                                       269   9e-73

>Glyma10g41430.1 
          Length = 426

 Score =  269 bits (687), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 139/156 (89%)

Query: 1   VKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLSLCIVFLTVELNTFFLKFCLWVPPRNPVI 60
           VKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLSLCIVFLTVELNTFFLKFCLW+PPRN V+
Sbjct: 270 VKRTLGQFTPAQWDKDEWHPLLGPWRFIQVLSLCIVFLTVELNTFFLKFCLWIPPRNSVV 329

Query: 61  VYRLILWWLIAIPTIREYNSYLQDRKPVKKVGAFCWLSLAXXXXXXXXXXKFGHGLYPNP 120
           +YRLILWWL+AIPTIREYNSYLQDRKPVKKVGA+CWLSLA          KFGHGLYP P
Sbjct: 330 IYRLILWWLLAIPTIREYNSYLQDRKPVKKVGAYCWLSLAICIVELLICIKFGHGLYPKP 389

Query: 121 MPVWLVIFWASIGVALLTFLAIWSWQLHRRLGRKRQ 156
           MP+WLVIFW+ +GV ++TFL +WSWQLHR LG K++
Sbjct: 390 MPIWLVIFWSGVGVTIVTFLLLWSWQLHRSLGNKKR 425