Jatropha Genome Database

JcCA0127751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127751.10 - phase: 0 /partial
         (166 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g06840.1                                                       281   3e-76

>Glyma08g06840.1 
          Length = 316

 Score =  281 bits (718), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 130/166 (78%), Positives = 153/166 (92%)

Query: 1   IGITGLPLGIFTYVLDRVPPGTVDVILSYCHYSINDSTLLDILPYLKSKGVGIISASPLA 60
           IGITGLPLGIF+YVLDRVPPGT+DV+LSYCHY +ND++L D++PYLK+KGVGII+ASPL+
Sbjct: 151 IGITGLPLGIFSYVLDRVPPGTLDVVLSYCHYCVNDTSLGDLVPYLKTKGVGIINASPLS 210

Query: 61  MGLLTENGPPEWHPASPELKSACQAAAAYCKEKGKNISKLAMQYSLSNKDISTVLVGMNS 120
           MGLLTE+GPPEWHPAS ELKSACQAAA +CKEKGKNISKLA+QYSL NK+I++VLVGM S
Sbjct: 211 MGLLTESGPPEWHPASLELKSACQAAATHCKEKGKNISKLALQYSLLNKEITSVLVGMKS 270

Query: 121 VRQVEENVTAAIELATFGKDQQTLAEIEAIVSPVKNQTWPSGIQHS 166
           V QVEENV AA ELAT G D++TL+E+EAI+ PVKNQ+WPSGIQ S
Sbjct: 271 VEQVEENVAAARELATSGIDEETLSEVEAILKPVKNQSWPSGIQQS 316