Jatropha Genome Database

JcCA0127661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0127661.10 - phase: 0 /pseudo
         (169 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g40470.1                                                       230   6e-61
Glyma09g21050.1                                                       227   4e-60
Glyma02g40470.3                                                       219   2e-57
Glyma02g40470.2                                                       218   3e-57
Glyma07g23190.1                                                        86   2e-17

>Glyma02g40470.1 
          Length = 377

 Score =  230 bits (586), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 113/155 (72%), Positives = 126/155 (81%), Gaps = 1/155 (0%)

Query: 1   AMADAAHPACILETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHISIAGGIIN 60
           AMA+AA+PA +LETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHIS AGG+ +
Sbjct: 186 AMANAAYPAYMLETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHISAAGGVAD 245

Query: 61  AIKAVDQYLEQRNLQMXXXXXXXXXXXXXXXXDYTSQTKTSLTRIMLDNMVIPLPNGDVD 120
           A+KAVD YLEQ NLQM                 Y+SQTKTSLTRIMLDNMV+PLPNGDVD
Sbjct: 246 ALKAVDLYLEQNNLQMEVEVETRTLEEVEEVLHYSSQTKTSLTRIMLDNMVVPLPNGDVD 305

Query: 121 VSMLKQAVELINGRFETEASGKCXLLKQXHKIGQT 155
           +SMLK+AV+LINGR+ETEASG    L   HKIGQ+
Sbjct: 306 ISMLKEAVQLINGRYETEASGNV-TLDTVHKIGQS 339


>Glyma09g21050.1 
          Length = 377

 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/155 (72%), Positives = 126/155 (81%), Gaps = 1/155 (0%)

Query: 1   AMADAAHPACILETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHISIAGGIIN 60
           AMA+AA+PA +LETRKTAPGLRLVDKWAVLIGGG+NHRMGLFDMVMIKDNHIS AGG+ +
Sbjct: 186 AMANAAYPAYMLETRKTAPGLRLVDKWAVLIGGGQNHRMGLFDMVMIKDNHISAAGGVAD 245

Query: 61  AIKAVDQYLEQRNLQMXXXXXXXXXXXXXXXXDYTSQTKTSLTRIMLDNMVIPLPNGDVD 120
           A+KAVD YLEQ NLQM                 Y+SQTKTSLTRIMLDNMV+PLPNGDVD
Sbjct: 246 ALKAVDLYLEQNNLQMEVEVETRTLEEVEEVLHYSSQTKTSLTRIMLDNMVVPLPNGDVD 305

Query: 121 VSMLKQAVELINGRFETEASGKCXLLKQXHKIGQT 155
           +SMLK+AV+LINGR+ETEASG    L   HKIGQ+
Sbjct: 306 ISMLKEAVQLINGRYETEASGNV-TLDTVHKIGQS 339


>Glyma02g40470.3 
          Length = 330

 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 116/138 (84%)

Query: 1   AMADAAHPACILETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHISIAGGIIN 60
           AMA+AA+PA +LETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHIS AGG+ +
Sbjct: 186 AMANAAYPAYMLETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHISAAGGVAD 245

Query: 61  AIKAVDQYLEQRNLQMXXXXXXXXXXXXXXXXDYTSQTKTSLTRIMLDNMVIPLPNGDVD 120
           A+KAVD YLEQ NLQM                 Y+SQTKTSLTRIMLDNMV+PLPNGDVD
Sbjct: 246 ALKAVDLYLEQNNLQMEVEVETRTLEEVEEVLHYSSQTKTSLTRIMLDNMVVPLPNGDVD 305

Query: 121 VSMLKQAVELINGRFETE 138
           +SMLK+AV+LINGR+ETE
Sbjct: 306 ISMLKEAVQLINGRYETE 323


>Glyma02g40470.2 
          Length = 339

 Score =  218 bits (554), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 116/138 (84%)

Query: 1   AMADAAHPACILETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHISIAGGIIN 60
           AMA+AA+PA +LETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHIS AGG+ +
Sbjct: 186 AMANAAYPAYMLETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHISAAGGVAD 245

Query: 61  AIKAVDQYLEQRNLQMXXXXXXXXXXXXXXXXDYTSQTKTSLTRIMLDNMVIPLPNGDVD 120
           A+KAVD YLEQ NLQM                 Y+SQTKTSLTRIMLDNMV+PLPNGDVD
Sbjct: 246 ALKAVDLYLEQNNLQMEVEVETRTLEEVEEVLHYSSQTKTSLTRIMLDNMVVPLPNGDVD 305

Query: 121 VSMLKQAVELINGRFETE 138
           +SMLK+AV+LINGR+ETE
Sbjct: 306 ISMLKEAVQLINGRYETE 323


>Glyma07g23190.1 
          Length = 237

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 44/46 (95%)

Query: 94  YTSQTKTSLTRIMLDNMVIPLPNGDVDVSMLKQAVELINGRFETEA 139
           Y+SQTKTSLTRIMLDNMV+PLPNGD+D+SMLK+ V+LINGR+ETE 
Sbjct: 154 YSSQTKTSLTRIMLDNMVVPLPNGDLDISMLKEVVQLINGRYETEV 199