Jatropha Genome Database

JcCA0123391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0123391.10 + phase: 0 /pseudo/partial
         (113 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g39800.1                                                       184   2e-47
Glyma18g46390.1                                                       183   4e-47

>Glyma09g39800.1 
          Length = 247

 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/121 (76%), Positives = 100/121 (82%), Gaps = 9/121 (7%)

Query: 1   MINVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFSHLNLTFSIGGQISFDT--- 57
           M+NVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKF+HLNLTFSIGGQISFD    
Sbjct: 127 MLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQ 186

Query: 58  A*DTSMSLM------KSTSFGDKTYKGGNDYEIYESDRTVGHTVTSPDDTVVQCKALFLA 111
             D +  L       +   FGDKTYKGGND+EIYES+RT+GHTVTSPDDTV QCK+LFL 
Sbjct: 187 GWDKTYCLRYLDGFNEIHFFGDKTYKGGNDHEIYESERTIGHTVTSPDDTVKQCKSLFLE 246

Query: 112 N 112
           N
Sbjct: 247 N 247


>Glyma18g46390.1 
          Length = 247

 Score =  183 bits (464), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/121 (76%), Positives = 100/121 (82%), Gaps = 9/121 (7%)

Query: 1   MINVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFSHLNLTFSIGGQISFDT--- 57
           M+NVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKF+HLNLTFSIGGQISF+    
Sbjct: 127 MLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGGQISFEVFPQ 186

Query: 58  A*DTSMSLM------KSTSFGDKTYKGGNDYEIYESDRTVGHTVTSPDDTVVQCKALFLA 111
             D +  L       +   FGDKTYKGGND+EIYES+RTVGHTVTSPDDTV QCK+LFL 
Sbjct: 187 GWDKTYCLRYLDGFNEIHFFGDKTYKGGNDHEIYESERTVGHTVTSPDDTVKQCKSLFLE 246

Query: 112 N 112
           N
Sbjct: 247 N 247