Jatropha Genome Database

JcCA0122941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122941.10 - phase: 0 
         (251 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g29250.1                                                       284   7e-77
Glyma08g12410.1                                                       240   1e-63

>Glyma05g29250.1 
          Length = 384

 Score =  284 bits (726), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 158/252 (62%), Positives = 197/252 (78%), Gaps = 6/252 (2%)

Query: 6   QVKIIDIHQHCLYKTLRGGHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKIV 65
           +VKIIDIHQ CLYKTLR GHTSICS+V+F+PWR WEVI+GGLDS L++WDFS+GRP K+V
Sbjct: 133 EVKIIDIHQQCLYKTLRAGHTSICSTVEFLPWRSWEVISGGLDSMLMLWDFSKGRPYKVV 192

Query: 66  DFGLPDMKSSNTAQCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESELAAI 125
           DF   D+ S    +C NPAFVHAIA+P+ DMLD    IC   RGDG ++VI+IE+E+AA 
Sbjct: 193 DFATFDVSSGIAGRCVNPAFVHAIAIPEVDMLDKLDKICAVARGDGAIDVINIETEMAAT 252

Query: 126 RSKSTSKARKGSQSISKEYIATAGTDG-----SRLHLDYSLGGHVAAVSCVAFSLFRERG 180
           +SKS+S +RKGS S SK+  +++ TD       RLHLDY+LGGH AAVS +AFSLF ERG
Sbjct: 253 KSKSSSNSRKGSHSRSKDGSSSSNTDADQNGKKRLHLDYTLGGHTAAVSSLAFSLFGERG 312

Query: 181 KFIISGGNDKSVKVWDCFRYLGTGQS-GCNNDILRLNIDLSKKVNWLCTTPTESENLVVC 239
           KF+ISGGNDK VKVW+   Y   G S   NN+IL LNI++ +KVNWLCTT  +++NLVVC
Sbjct: 313 KFLISGGNDKLVKVWNLSCYPDAGLSDDNNNNILHLNIEVPRKVNWLCTTSADTDNLVVC 372

Query: 240 DTTKVVKVYSVS 251
           DT+KVVKVYS++
Sbjct: 373 DTSKVVKVYSIT 384


>Glyma08g12410.1 
          Length = 363

 Score =  240 bits (612), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 128/206 (62%), Positives = 158/206 (76%), Gaps = 5/206 (2%)

Query: 6   QVKIIDIHQHCLYKTLRGGHTSICSSVQFIPWRPWEVITGGLDSKLVMWDFSRGRPLKIV 65
           +VKIIDI Q CLYKTLR GHTSICS+V+F+PWR WEVI+GGLDS L++WDFS+GRP K+V
Sbjct: 133 EVKIIDIRQQCLYKTLRAGHTSICSTVEFLPWRSWEVISGGLDSMLMLWDFSKGRPYKVV 192

Query: 66  DFGLPDMKSSNTAQCFNPAFVHAIAVPDADMLDNSGHICIAGRGDGVLNVIDIESELAAI 125
           DF   D+ S    +C NPAFVHAIAVP+ DMLD    IC A RGDG ++VI+IE+E+AA 
Sbjct: 193 DFATFDVSSGIAGRCVNPAFVHAIAVPEVDMLDKLDKICAAARGDGAIDVINIETEMAAT 252

Query: 126 RSKSTSKARKGSQSISKEYIATAGTDG-----SRLHLDYSLGGHVAAVSCVAFSLFRERG 180
           +SKS+S +RKGS S SK+  +++ TD       RLHL+Y+LGGH AAVS +AFSLF ERG
Sbjct: 253 KSKSSSNSRKGSHSRSKDGSSSSNTDADQNGKKRLHLNYTLGGHTAAVSSLAFSLFGERG 312

Query: 181 KFIISGGNDKSVKVWDCFRYLGTGQS 206
           KF+ISGGNDK VK+W+   Y   G S
Sbjct: 313 KFLISGGNDKLVKIWNWSCYPDVGLS 338