Jatropha Genome Database

JcCA0122171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122171.10 - phase: 0 /partial
         (107 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g03300.2                                                       172   9e-44
Glyma07g03300.1                                                       171   1e-43
Glyma08g22810.1                                                       168   1e-42

>Glyma07g03300.2 
          Length = 161

 Score =  172 bits (435), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 89/107 (83%)

Query: 1   MATATXXXXXXXXRLYKDYLQNPKSAXXXXXXIEGTYVCFGANYTTEYVLPSLEEQGVRQ 60
           MATAT        RLYKDYLQNPKSA      IEGTY+CFGANYTT  VLP+LEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYLQNPKSAPDPPPPIEGTYLCFGANYTTSDVLPTLEEQGVRQ 60

Query: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEDIS 107
           LY KGPNVDFKKELRSLN ELQLH+LELAD+L+ERPSQYARRVE+IS
Sbjct: 61  LYSKGPNVDFKKELRSLNGELQLHVLELADILIERPSQYARRVEEIS 107


>Glyma07g03300.1 
          Length = 168

 Score =  171 bits (434), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 89/107 (83%)

Query: 1   MATATXXXXXXXXRLYKDYLQNPKSAXXXXXXIEGTYVCFGANYTTEYVLPSLEEQGVRQ 60
           MATAT        RLYKDYLQNPKSA      IEGTY+CFGANYTT  VLP+LEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYLQNPKSAPDPPPPIEGTYLCFGANYTTSDVLPTLEEQGVRQ 60

Query: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEDIS 107
           LY KGPNVDFKKELRSLN ELQLH+LELAD+L+ERPSQYARRVE+IS
Sbjct: 61  LYSKGPNVDFKKELRSLNGELQLHVLELADILIERPSQYARRVEEIS 107


>Glyma08g22810.1 
          Length = 168

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/107 (75%), Positives = 88/107 (82%)

Query: 1   MATATXXXXXXXXRLYKDYLQNPKSAXXXXXXIEGTYVCFGANYTTEYVLPSLEEQGVRQ 60
           MATAT        RLYKDYLQ+P SA      IEGTY+CFGANYTT  VLP+LEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYLQDPNSAPDPPPPIEGTYLCFGANYTTSDVLPTLEEQGVRQ 60

Query: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEDIS 107
           LY KGPNVDFKKELRSLN ELQLH+LELAD+L+ERPSQYARRVE+IS
Sbjct: 61  LYSKGPNVDFKKELRSLNGELQLHVLELADILIERPSQYARRVEEIS 107