Jatropha Genome Database

JcCA0122021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122021.20 + phase: 0 /partial
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g09580.1                                                        59   2e-09
Glyma01g35780.2                                                        57   6e-09
Glyma01g35780.1                                                        56   7e-09
Glyma11g00300.2                                                        51   3e-07
Glyma11g00300.1                                                        51   3e-07
Glyma01g45430.1                                                        50   4e-07
Glyma11g06240.1                                                        49   1e-06
Glyma01g39030.1                                                        47   5e-06
Glyma08g43590.2                                                        47   7e-06
Glyma08g43590.1                                                        47   7e-06
Glyma01g39030.2                                                        46   9e-06

>Glyma11g09580.1 
          Length = 132

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 31/41 (75%)

Query: 53 AGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
          +GI KV PVS  L DFLG P+ SRTDAVKK+W +IK  NLQ
Sbjct: 51 SGIQKVVPVSSELGDFLGAPQVSRTDAVKKVWAYIKLQNLQ 91


>Glyma01g35780.2 
          Length = 102

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 53 AGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
          +GI KV PVS  L DFLG P+ SRT+AVKK+W +IK  NLQ
Sbjct: 51 SGIQKVVPVSSELGDFLGAPQVSRTEAVKKVWAYIKLQNLQ 91


>Glyma01g35780.1 
          Length = 132

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 53 AGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
          +GI KV PVS  L DFLG P+ SRT+AVKK+W +IK  NLQ
Sbjct: 51 SGIQKVVPVSSELGDFLGAPQVSRTEAVKKVWAYIKLQNLQ 91


>Glyma11g00300.2 
          Length = 118

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 54 GILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
          GI+K   VSP + D +G PE +RT  +K+IW +IK NNLQ
Sbjct: 35 GIMKPRKVSPEMEDLVGAPEMARTQVLKRIWAYIKDNNLQ 74


>Glyma11g00300.1 
          Length = 148

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 54  GILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           GI+K   VSP + D +G PE +RT  +K+IW +IK NNLQ
Sbjct: 65  GIMKPRKVSPEMEDLVGAPEMARTQVLKRIWAYIKDNNLQ 104


>Glyma01g45430.1 
          Length = 158

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 54  GILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           GI+K   VSP + D +G PE +RT  +K+IW +IK NNLQ
Sbjct: 75  GIMKPRKVSPEMEDLVGAPEMARTQVLKRIWAYIKDNNLQ 114


>Glyma11g06240.1 
          Length = 346

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 30/41 (73%)

Query: 53  AGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
            G  K+  +SP L++F+G PE +RT+ VK++W +I++ NLQ
Sbjct: 143 GGFCKLCSLSPQLQEFMGAPEMARTEVVKQLWAYIREKNLQ 183


>Glyma01g39030.1 
          Length = 337

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 30/41 (73%)

Query: 53  AGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
            G  K+  +SP L++F+  PE +RT+ VK++W++I++ NLQ
Sbjct: 134 GGFCKLCSLSPQLQEFMEAPEMARTEVVKQLWVYIREKNLQ 174


>Glyma08g43590.2 
          Length = 330

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 52  PAGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           P G+ K+  VSP L+  +G P  SRT+ VK++W +I++NNLQ
Sbjct: 145 PGGLTKICGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQ 186


>Glyma08g43590.1 
          Length = 330

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 52  PAGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
           P G+ K+  VSP L+  +G P  SRT+ VK++W +I++NNLQ
Sbjct: 145 PGGLTKICGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQ 186


>Glyma01g39030.2 
          Length = 243

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 30/41 (73%)

Query: 53  AGILKVTPVSPALRDFLGVPESSRTDAVKKIWIHIKQNNLQ 93
            G  K+  +SP L++F+  PE +RT+ VK++W++I++ NLQ
Sbjct: 134 GGFCKLCSLSPQLQEFMEAPEMARTEVVKQLWVYIREKNLQ 174