Jatropha Genome Database

JcCA0118941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0118941.10 - phase: 0 /partial
         (87 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g16180.1                                                       165   1e-41
Glyma06g47380.1                                                       165   1e-41
Glyma12g32570.1                                                       140   3e-34
Glyma06g40580.1                                                       100   2e-22

>Glyma04g16180.1 
          Length = 434

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1   RKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYV 60
           RKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYV
Sbjct: 212 RKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYV 271

Query: 61  LCECDDRGCHMVGYFSK 77
           LCECDDRGCHMVGYFSK
Sbjct: 272 LCECDDRGCHMVGYFSK 288


>Glyma06g47380.1 
          Length = 434

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1   RKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYV 60
           RKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYV
Sbjct: 212 RKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYV 271

Query: 61  LCECDDRGCHMVGYFSK 77
           LCECDDRGCHMVGYFSK
Sbjct: 272 LCECDDRGCHMVGYFSK 288


>Glyma12g32570.1 
          Length = 155

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/68 (98%), Positives = 67/68 (98%)

Query: 1  RKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYV 60
          RKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQN CYLAKLFLDHKTLYYDVDLFLFYV
Sbjct: 1  RKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNFCYLAKLFLDHKTLYYDVDLFLFYV 60

Query: 61 LCECDDRG 68
          LCECDDRG
Sbjct: 61 LCECDDRG 68


>Glyma06g40580.1 
          Length = 51

 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query: 27 KKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSK 77
          KKNKVYGQNLCYLAKLFLDHK LYYDVDLFLFYVLCECD+RGCHMVGYFSK
Sbjct: 1  KKNKVYGQNLCYLAKLFLDHKALYYDVDLFLFYVLCECDERGCHMVGYFSK 51