Jatropha Genome Database

JcCA0117501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0117501.10 - phase: 0 
         (100 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g13830.1                                                       175   1e-44
Glyma09g02870.1                                                       175   1e-44
Glyma08g25670.2                                                        70   6e-13

>Glyma15g13830.1 
          Length = 394

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/86 (94%), Positives = 86/86 (100%)

Query: 1  MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIE 60
          MPPK++KSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL+IPAENFPFCTIE
Sbjct: 1  MPPKSAKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60

Query: 61 PNEARVNIPDERFEWLCQLYKPKSEV 86
          PNEARVN+PDERFEWLCQL+KPKSEV
Sbjct: 61 PNEARVNVPDERFEWLCQLFKPKSEV 86


>Glyma09g02870.1 
          Length = 394

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/86 (94%), Positives = 86/86 (100%)

Query: 1  MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIE 60
          MPPK++KSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL+IPAENFPFCTIE
Sbjct: 1  MPPKSAKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60

Query: 61 PNEARVNIPDERFEWLCQLYKPKSEV 86
          PNEARVN+PDERFEWLCQL+KPKSEV
Sbjct: 61 PNEARVNVPDERFEWLCQLFKPKSEV 86


>Glyma08g25670.2 
          Length = 420

 Score = 70.1 bits (170), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 25  LKIGIVGLPNVGKSTLFNTLTKL-SIPAENFPFCTIEPNEARVNIPDERFEWLCQLYKPK 83
           LK GIVGLPNVGKSTLFN + +     A NFPFCTIEPN   V +PD R   L  L K +
Sbjct: 54  LKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQ 113

Query: 84  SEV 86
             V
Sbjct: 114 RAV 116